mirror of
https://github.com/BioArchLinux/Packages.git
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116 lines
1.9 KiB
Bash
116 lines
1.9 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=singleCellTK
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_pkgver=2.4.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('MIT')
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depends=(
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r
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r-annotationdbi
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r-ape
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r-batchelor
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r-biobase
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r-biocparallel
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r-celda
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r-celldex
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r-circlize
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r-colorspace
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r-colourpicker
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r-complexheatmap
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r-cowplot
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r-data.table
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r-delayedarray
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r-delayedmatrixstats
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r-deseq2
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r-dplyr
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r-dropletutils
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r-dt
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r-enrichr
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r-experimenthub
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r-fields
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r-fishpond
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r-ggplot2
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r-ggplotify
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r-ggrepel
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r-ggtree
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r-gridextra
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r-gseabase
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r-gsva
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r-gsvadata
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r-igraph
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r-limma
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r-magrittr
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r-mast
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r-matrixstats
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r-metap
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r-msigdbr
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r-multtest
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r-plotly
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r-r.utils
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r-rcolorbrewer
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r-reshape2
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r-reticulate
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r-rlang
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r-rmarkdown
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r-rocr
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r-rtsne
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r-s4vectors
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r-scater
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r-scdblfinder
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r-scds
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r-scmerge
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r-scran
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r-scrnaseq
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r-seurat
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r-shiny
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r-shinyalert
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r-shinycssloaders
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r-shinyjs
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r-singlecellexperiment
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r-singler
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r-summarizedexperiment
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r-sva
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r-tenxpbmcdata
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r-tibble
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r-tximport
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r-vam
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r-withr
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r-yaml
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r-zinbwave
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)
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optdepends=(
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r-biocgenerics
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r-biocstyle
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r-kableextra
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r-knitr
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r-lintr
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r-org.mm.eg.db
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r-rsubread
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r-shinybs
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r-shinyfiles
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r-shinyjqui
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r-shinythemes
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r-shinywidgets
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r-spelling
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r-stringr
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r-testthat
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r-xtable
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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