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68 lines
1.2 KiB
Bash
68 lines
1.2 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=TBSignatureProfiler
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_pkgver=1.6.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Profile RNA-Seq Data Using TB Pathway Signatures'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('MIT')
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depends=(
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r
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r-assign
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r-biocgenerics
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r-biocparallel
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r-complexheatmap
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r-deseq2
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r-dt
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r-edger
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r-gdata
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r-ggplot2
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r-gsva
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r-magrittr
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r-rcolorbrewer
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r-reshape2
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r-rlang
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r-rocit
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r-s4vectors
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r-singscore
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r-summarizedexperiment
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)
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optdepends=(
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r-biocstyle
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r-caret
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r-circlize
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r-class
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r-covr
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r-dplyr
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r-e1071
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r-glmnet
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r-hgnchelper
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r-impute
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r-knitr
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r-lintr
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r-mass
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r-plyr
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r-proc
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r-randomforest
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r-rmarkdown
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r-shiny
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r-spelling
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r-sva
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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