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49 lines
1 KiB
Bash
49 lines
1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=VanillaICE
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_pkgver=1.56.3
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='A Hidden Markov Model for high throughput genotyping arrays'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('LGPL')
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depends=(
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r
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r-biobase
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r-biocgenerics
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r-bsgenome.hsapiens.ucsc.hg18
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r-crlmm
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r-data.table
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r-foreach
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r-genomeinfodb
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r-genomicranges
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r-iranges
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r-matrixgenerics
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r-matrixstats
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r-oligoclasses
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r-s4vectors
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r-summarizedexperiment
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)
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optdepends=(
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r-domc
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r-dompi
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r-doparallel
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r-doredis
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r-dosnow
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r-human610quadv1bcrlmm
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r-runit
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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