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55 lines
1.1 KiB
Bash
55 lines
1.1 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=CytoPipeline
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_pkgver=1.0.2
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="Automation and visualization of flow cytometry data analysis pipelines"
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arch=(any)
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url="https://bioconductor.org/packages/${_pkgname}"
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license=(GPL3)
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depends=(
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r-biocfilecache
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r-biocparallel
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r-diagram
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r-flowai
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r-flowcore
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r-ggcyto
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r-ggplot2
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r-jsonlite
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r-peacoqc
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r-rlang
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r-scales
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r-withr
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)
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checkdepends=(
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r-testthat
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r-vdiffr
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)
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optdepends=(
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r-biocstyle
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r-diffviewer
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r-knitr
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r-rmarkdown
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r-testthat
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r-vdiffr
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('03008ccf1f86b39cc48a5f9fa82ae3a2')
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sha256sums=('145a7860d3d62ba50957fa3b05a1aa3f3b79ac0d2808369e2833e1833476e176')
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build() {
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mkdir -p build
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R CMD INSTALL "$_pkgname" -l build
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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