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55 lines
1.2 KiB
Bash
55 lines
1.2 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=beer
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_pkgver=1.10.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Bayesian Enrichment Estimation in R"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('MIT')
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depends=(
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jags
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r-biocparallel
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r-cli
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r-edger
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r-phipdata
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r-progressr
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r-rjags
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r-summarizedexperiment
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)
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checkdepends=(
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r-testthat
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)
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optdepends=(
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r-biocstyle
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r-covr
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r-dplyr
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r-ggplot2
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r-knitr
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r-rmarkdown
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r-spelling
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('e2b2b44d638bb6b8a99e37fcdfe0bc67')
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b2sums=('99b3c9968be7b91183b8a0f73d3cbb63d5d83b5b4a4af9c8ea9a23ecfa3fea8f0bc82d1175005fbb4246767fff9c3b5318761622c275e0643f4343661033ea1e')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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install -d "$pkgdir/usr/share/licenses/$pkgname"
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ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
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}
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