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57 lines
1.2 KiB
Bash
57 lines
1.2 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=rstpm2
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_pkgver=1.6.3
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Smooth Survival Models, Including Generalized Survival Models"
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arch=(x86_64)
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url="https://cran.r-project.org/package=$_pkgname"
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license=('GPL-2.0-only OR GPL-3.0-only')
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depends=(
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blas
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lapack
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r-bbmle
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r-desolve
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r-fastghquad
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r-mvtnorm
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r-rcpp
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)
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makedepends=(
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gcc-fortran
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r-bh
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r-rcpparmadillo
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)
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checkdepends=(
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r-testthat
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)
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optdepends=(
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r-eha
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r-flexsurv
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r-ggplot2
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r-mstate
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r-readstata13
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r-scales
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r-survpen
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r-testthat
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r-timereg
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('2fb292e291b311986d90f7783f4e1ea2')
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b2sums=('50cd108d8b899f487528c8cfbcb3941902ba17b0220f5aebe38a5ff49629b193dc44a06659918df31efe0fd15a39512d04bc832226870e4e8374a4f22c2d441d')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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