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44 lines
3.7 KiB
Text
44 lines
3.7 KiB
Text
make: Entering directory '/build/mafft/src/mafft-7.487-with-extensions/core'
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cp mafft mafft-homologs.rb mafft-sparsecore.rb ../scripts
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chmod 755 ../scripts/*
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cp mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ../binaries
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chmod 755 ../binaries/*
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cp mafft.1 mafft-homologs.1 ../binaries
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done.
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mkdir -p /build/mafft/pkg/mafft/usr/lib/mafft
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chmod 755 /build/mafft/pkg/mafft/usr/lib/mafft
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mkdir -p /build/mafft/pkg/mafft/usr/bin
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chmod 755 /build/mafft/pkg/mafft/usr/bin
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chmod 755 mafft mafft-homologs.rb mafft-sparsecore.rb
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install mafft mafft-homologs.rb mafft-sparsecore.rb /build/mafft/pkg/mafft/usr/bin
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chmod 755 dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ||: # in MinGW, it's ok if this fails
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strip dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ||: # may fail for dash_client on mac.
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install dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version /build/mafft/pkg/mafft/usr/lib/mafft
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install mafftash_premafft.pl seekquencer_premafft.pl /build/mafft/pkg/mafft/usr/lib/mafft
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install -m 644 mafft.1 mafft-homologs.1 /build/mafft/pkg/mafft/usr/lib/mafft
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( cd /build/mafft/pkg/mafft/usr/bin; \
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rm -f linsi ginsi einsi fftns fftnsi nwns nwnsi xinsi qinsi; \
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rm -f mafft-linsi mafft-ginsi mafft-einsi mafft-fftns mafft-fftnsi mafft-nwns mafft-nwnsi mafft-xinsi mafft-qinsi mafft-randomcore.rb ; \
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ln -s mafft linsi; ln -s mafft ginsi; ln -s mafft fftns; \
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ln -s mafft fftnsi; ln -s mafft nwns; ln -s mafft nwnsi; \
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ln -s mafft einsi; \
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ln -s mafft mafft-linsi; ln -s mafft mafft-ginsi; ln -s mafft mafft-fftns; \
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ln -s mafft mafft-fftnsi; ln -s mafft mafft-nwns; ln -s mafft mafft-nwnsi; \
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ln -s mafft mafft-einsi; ln -s mafft mafft-xinsi; ln -s mafft mafft-qinsi;\
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rm -f mafft-profile mafft-profile.exe; ln -s /usr/lib/mafft/mafft-profile .; \
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rm -f mafft-distance mafft-distance.exe; ln -s /usr/lib/mafft/mafft-distance . )
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mkdir -p /build/mafft/pkg/mafft/usr/share/man/man1
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chmod 755 /build/mafft/pkg/mafft/usr/share/man/man1
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install -m 644 mafft.1 mafft-homologs.1 /build/mafft/pkg/mafft/usr/share/man/man1
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make: Leaving directory '/build/mafft/src/mafft-7.487-with-extensions/core'
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make: Entering directory '/build/mafft/src/mafft-7.487-with-extensions/extensions'
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cp mxscarnamod ../binaries
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chmod 755 ../binaries/*
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done.
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mkdir -p /build/mafft/pkg/mafft/usr/lib/mafft
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chmod 755 /build/mafft/pkg/mafft/usr/lib/mafft
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chmod 755 mxscarnamod
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install mxscarnamod /build/mafft/pkg/mafft/usr/lib/mafft
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make: Leaving directory '/build/mafft/src/mafft-7.487-with-extensions/extensions'
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removed '/build/mafft/pkg/mafft/usr/lib/mafft/mafft-homologs.1'
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removed '/build/mafft/pkg/mafft/usr/lib/mafft/mafft.1'
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