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78 lines
1.3 KiB
Bash
78 lines
1.3 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=autonomics
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_pkgver=1.2.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Generifying and intuifying cross-platform omics analysis'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-abind
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r-assertive
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r-biocfilecache
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r-biocgenerics
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r-colorspace
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r-data.table
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r-edger
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r-ggplot2
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r-ggrepel
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r-gridextra
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r-limma
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r-magrittr
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r-matrixstats
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r-multiassayexperiment
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r-pcamethods
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r-r.utils
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r-rappdirs
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r-readxl
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r-rlang
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r-s4vectors
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r-scales
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r-stringi
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r-summarizedexperiment
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r-tidyr
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)
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optdepends=(
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r-affy
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r-annotationdbi
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r-biocmanager
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r-diagram
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r-genomicranges
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r-geoquery
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r-hgu95av2.db
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r-icsnp
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r-knitr
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r-lme4
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r-lmertest
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r-mass
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r-mixomics
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r-mpm
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r-nlme
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r-org.hs.eg.db
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r-org.mm.eg.db
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r-rcurl
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r-remotes
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r-rmarkdown
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r-ropls
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r-rsubread
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r-rtracklayer
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r-seqinr
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r-statmod
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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