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54 lines
1 KiB
Bash
54 lines
1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=benchdamic
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_pkgver=1.0.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Benchmark of differential abundance methods on microbiome data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
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r
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r-aldex2
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r-biocparallel
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r-corncob
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r-cowplot
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r-deseq2
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r-edger
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r-ffpe
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r-ggdendro
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r-ggplot2
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r-limma
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r-mast
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r-metagenomeseq
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r-mglm
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r-phyloseq
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r-plyr
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r-rcolorbrewer
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r-reshape2
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r-seurat
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r-summarizedexperiment
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r-zinbwave
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)
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optdepends=(
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r-biocstyle
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r-curatedmetagenomicdata
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r-hmp16sdata
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r-knitr
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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