mirror of
https://github.com/BioArchLinux/Packages.git
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47 lines
1,019 B
Bash
47 lines
1,019 B
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=BubbleTree
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_pkgver=2.24.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('LGPL')
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depends=(
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r
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r-biobase
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r-biocgenerics
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r-biocstyle
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r-biovizbase
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r-dplyr
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r-e1071
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r-genomicranges
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r-ggplot2
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r-gridextra
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r-gtable
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r-gtools
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r-iranges
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r-limma
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r-magrittr
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r-plyr
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r-rcolorbrewer
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r-writexls
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)
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optdepends=(
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r-knitr
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r-rmarkdown
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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