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https://github.com/BioArchLinux/Packages.git
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54 lines
1.2 KiB
Bash
54 lines
1.2 KiB
Bash
# system requirements: libcurl4-openssl-dev, libxml2-dev, libssl-dev,gfortran, build-essential, libz-dev, zlib1g-dev
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=CeTF
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_pkgver=1.6.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-circlize
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r-clusterprofiler
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r-complexheatmap
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r-deseq2
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r-dplyr
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r-genomictools
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r-genomictools.filehandler
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r-ggally
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r-ggnetwork
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r-ggplot2
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r-ggpubr
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r-ggrepel
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r-igraph
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r-network
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r-rcpp
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r-rcpparmadillo
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r-rcy3
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r-s4vectors
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r-summarizedexperiment
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)
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optdepends=(
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r-airway
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r-kableextra
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r-knitr
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r-org.hs.eg.db
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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