mirror of
https://github.com/BioArchLinux/Packages.git
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69 lines
1.3 KiB
Bash
69 lines
1.3 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=ChAMP
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_pkgver=2.24.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-bumphunter
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r-champdata
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r-combinat
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r-dendextend
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r-dmrcate
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r-dnacopy
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r-doparallel
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r-dt
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r-genomicranges
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r-ggplot2
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r-globaltest
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r-goseq
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r-hmisc
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r-illumina450probevariants.db
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r-illuminahumanmethylation450kmanifest
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r-illuminahumanmethylationepicanno.ilm10b4.hg19
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r-illuminahumanmethylationepicmanifest
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r-illuminaio
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r-impute
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r-isva
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r-kpmt
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r-limma
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r-marray
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r-matrixstats
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r-minfi
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r-missmethyl
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r-plotly
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r-plyr
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r-preprocesscore
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r-prettydoc
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r-quadprog
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r-qvalue
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r-rcolorbrewer
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r-rmarkdown
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r-rpmm
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r-shiny
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r-shinythemes
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r-sva
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r-watermelon
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)
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optdepends=(
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r-knitr
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r-rmarkdown
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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