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51 lines
1.1 KiB
Bash
51 lines
1.1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=ChIPQC
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_pkgver=1.30.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Quality metrics for ChIPseq data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-biobase
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r-biocgenerics
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r-biocparallel
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r-chipseq
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r-diffbind
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r-genomicalignments
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r-genomicfeatures
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r-genomicranges
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r-ggplot2
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r-gtools
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r-iranges
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r-nozzle.r1
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r-reshape2
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r-rsamtools
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r-s4vectors
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r-txdb.celegans.ucsc.ce6.ensgene
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r-txdb.dmelanogaster.ucsc.dm3.ensgene
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r-txdb.hsapiens.ucsc.hg18.knowngene
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r-txdb.hsapiens.ucsc.hg19.knowngene
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r-txdb.mmusculus.ucsc.mm10.knowngene
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r-txdb.mmusculus.ucsc.mm9.knowngene
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r-txdb.rnorvegicus.ucsc.rn4.ensgene
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)
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optdepends=(
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r-biocstyle
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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