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82 lines
1.4 KiB
Bash
82 lines
1.4 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=ChromSCape
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_pkgver=1.4.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Analysis of single-cell epigenomics datasets with a Shiny App'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-batchelor
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r-biocparallel
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r-colorramps
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r-colourpicker
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r-consensusclusterplus
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r-coop
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r-delayedarray
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r-dplyr
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r-dt
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r-edger
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r-forcats
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r-fs
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r-genomicranges
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r-ggplot2
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r-iranges
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r-irlba
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r-jsonlite
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r-kableextra
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r-matrixtests
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r-msigdbr
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r-plotly
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r-qs
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r-qualv
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r-rcpp
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r-rlist
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r-rsamtools
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r-rtracklayer
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r-rtsne
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r-s4vectors
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r-scater
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r-scran
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r-shiny
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r-shinycssloaders
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r-shinydashboard
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r-shinydashboardplus
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r-shinyfiles
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r-shinyhelper
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r-shinyjs
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r-shinywidgets
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r-singlecellexperiment
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r-stringdist
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r-summarizedexperiment
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r-sushi
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r-tibble
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r-tidyr
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r-umap
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r-viridis
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)
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optdepends=(
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r-biocstyle
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r-future
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r-knitr
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r-markdown
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r-rmarkdown
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r-signac
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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