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78 lines
1.3 KiB
Bash
78 lines
1.3 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=cola
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_pkgver=2.0.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='A Framework for Consensus Partitioning'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('MIT')
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depends=(
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r
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r-biocgenerics
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r-brew
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r-circlize
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r-clue
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r-complexheatmap
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r-crayon
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r-digest
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r-doparallel
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r-eulerr
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r-foreach
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r-getoptlong
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r-globaloptions
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r-httr
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r-impute
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r-irlba
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r-knitr
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r-markdown
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r-matrixstats
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r-mclust
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r-microbenchmark
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r-png
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r-rcolorbrewer
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r-rcpp
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r-skmeans
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r-xml2
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)
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optdepends=(
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r-annotationdbi
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r-biocmanager
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r-clusterprofiler
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r-cowplot
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r-data.tree
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r-dendextend
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r-dose
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r-flexclust
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r-genefilter
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r-gplots
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r-hu6800.db
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r-kohonen
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r-mvtnorm
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r-nmf
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r-pamr
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r-polychrome
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r-reactomepa
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r-rmarkdown
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r-rtsne
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r-samr
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r-simplifyenrichment
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r-testthat
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r-umap
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r-wgcna
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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