mirror of
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70 lines
1.4 KiB
Bash
70 lines
1.4 KiB
Bash
# system requirements: libxml2: libxml2-dev (deb), libxml2-devel (rpm)libcurl: libcurl4-openssl-dev (deb), libcurl-devel (rpm)openssl: libssl-dev (deb), openssl-devel (rpm), libssl_dev(csw), openssl@1.1 (brew)
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=crossmeta
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_pkgver=1.20.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Cross Platform Meta-Analysis of Microarray Data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('MIT')
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depends=(
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r
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r-affxparser
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r-affy
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r-annotationdbi
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r-biobase
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r-biocgenerics
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r-biocmanager
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r-data.table
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r-dbi
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r-deseq2
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r-dt
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r-edger
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r-fdrtool
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r-geoquery
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r-limma
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r-matrixstats
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r-metama
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r-miniui
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r-oligo
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r-rcolorbrewer
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r-rcurl
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r-reader
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r-readxl
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r-rsqlite
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r-shiny
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r-shinybs
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r-shinyjs
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r-shinypanel
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r-shinywidgets
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r-statmod
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r-stringr
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r-summarizedexperiment
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r-sva
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r-tibble
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r-xml
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)
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optdepends=(
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r-knitr
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r-lydata
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r-org.hs.eg.db
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r-rmarkdown
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r-testthat
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r-tximportdata
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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