mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
52 lines
1 KiB
Bash
52 lines
1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
|
|
|
_pkgname=DEXSeq
|
|
_pkgver=1.40.0
|
|
pkgname=r-${_pkgname,,}
|
|
pkgver=${_pkgver//[:-]/.}
|
|
pkgrel=1
|
|
pkgdesc='Inference of differential exon usage in RNA-Seq'
|
|
arch=('any')
|
|
url="https://bioconductor.org/packages/${_pkgname}"
|
|
license=('GPL')
|
|
depends=(
|
|
r
|
|
r-annotationdbi
|
|
r-biobase
|
|
r-biocgenerics
|
|
r-biocparallel
|
|
r-biomart
|
|
r-deseq2
|
|
r-genefilter
|
|
r-geneplotter
|
|
r-genomicranges
|
|
r-hwriter
|
|
r-iranges
|
|
r-rcolorbrewer
|
|
r-rsamtools
|
|
r-s4vectors
|
|
r-statmod
|
|
r-stringr
|
|
r-summarizedexperiment
|
|
)
|
|
optdepends=(
|
|
r-biocstyle
|
|
r-genomicfeatures
|
|
r-knitr
|
|
r-parathyroidse
|
|
r-pasilla
|
|
r-rmarkdown
|
|
r-testthat
|
|
)
|
|
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
|
sha256sums=('a')
|
|
|
|
build() {
|
|
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
|
}
|
|
|
|
package() {
|
|
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
|
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
|
}
|
|
# vim:set ts=2 sw=2 et:
|