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37 lines
1 KiB
Bash
37 lines
1 KiB
Bash
# system requirements: Ensembl VEP (API version 104) and the Perl modulesDBI and DBD::mysql must be installed. See the package READMEand Ensembl installation instructions:http://www.ensembl.org/info/docs/tools/vep/script/vep_download.html#installer
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=ensemblVEP
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_pkgver=1.36.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='R Interface to Ensembl Variant Effect Predictor'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
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r
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r-biocgenerics
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r-biostrings
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r-genomeinfodb
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r-genomicranges
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r-s4vectors
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r-summarizedexperiment
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r-variantannotation
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)
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optdepends=(
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r-runit
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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