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72 lines
1.4 KiB
Bash
72 lines
1.4 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=GAPGOM
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_pkgver=1.10.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='GAPGOM (novel Gene Annotation Prediction and other GO Metrics)'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('MIT')
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depends=(
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r
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r-annotationdbi
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r-biobase
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r-biocfilecache
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r-data.table
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r-dplyr
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r-fastmatch
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r-geoquery
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r-go.db
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r-gosemsim
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r-graph
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r-igraph
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r-magrittr
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r-matrixstats
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r-org.hs.eg.db
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r-org.mm.eg.db
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r-plyr
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r-rbgl
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)
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optdepends=(
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r-ggplot2
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r-kableextra
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r-knitr
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r-org.ag.eg.db
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r-org.at.tair.db
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r-org.bt.eg.db
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r-org.ce.eg.db
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r-org.cf.eg.db
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r-org.dm.eg.db
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r-org.dr.eg.db
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r-org.eck12.eg.db
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r-org.ecsakai.eg.db
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r-org.gg.eg.db
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r-org.mmu.eg.db
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r-org.pf.plasmo.db
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r-org.pt.eg.db
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r-org.rn.eg.db
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r-org.sc.sgd.db
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r-org.ss.eg.db
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r-org.xl.eg.db
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r-prettydoc
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r-profvis
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r-pryr
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r-reshape2
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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