mirror of
https://github.com/BioArchLinux/Packages.git
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47 lines
983 B
Bash
47 lines
983 B
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=lumi
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_pkgver=2.46.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='BeadArray Specific Methods for Illumina Methylation and Expression Microarrays'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('LGPL')
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depends=(
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r
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r-affy
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r-annotate
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r-annotationdbi
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r-biobase
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r-dbi
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r-genomicfeatures
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r-genomicranges
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r-methylumi
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r-nleqslv
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r-preprocesscore
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r-rsqlite
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)
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optdepends=(
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r-beadarray
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r-genefilter
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r-limma
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r-lumibarnes
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r-lumihumanall.db
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r-lumihumanidmapping
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r-rcolorbrewer
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r-vsn
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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