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48 lines
953 B
Bash
48 lines
953 B
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=LymphoSeq
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_pkgver=1.22.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Analyze high-throughput sequencing of T and B cell receptors'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
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r
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r-biostrings
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r-circlize
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r-data.table
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r-dplyr
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r-ggplot2
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r-ggtree
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r-ineq
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r-lymphoseqdb
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r-msa
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r-phangorn
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r-plyr
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r-rcolorbrewer
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r-reshape
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r-stringdist
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r-upsetr
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r-venndiagram
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)
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optdepends=(
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r-knitr
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r-pheatmap
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r-rmarkdown
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r-wordcloud
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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