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59 lines
1.1 KiB
Bash
59 lines
1.1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=MAGAR
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_pkgver=1.2.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-argparse
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r-bigstatsr
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r-crlmm
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r-data.table
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r-doparallel
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r-ff
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r-hdf5array
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r-igraph
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r-impute
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r-jsonlite
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r-plyr
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r-reshape2
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r-rjson
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r-rnbeads
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r-rnbeads.hg19
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r-snpstats
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r-upsetr
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)
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optdepends=(
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r-biocgenerics
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r-biocmanager
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r-devtools
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r-gridextra
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r-jaspar2018
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r-knitr
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r-lola
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r-qqman
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r-rmarkdown
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r-rmutil
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r-runit
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r-seqlogo
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r-tfbstools
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r-venndiagram
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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