mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
79 lines
1.4 KiB
Bash
79 lines
1.4 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
|
|
|
_pkgname=metaseqR2
|
|
_pkgver=1.6.1
|
|
pkgname=r-${_pkgname,,}
|
|
pkgver=${_pkgver//[:-]/.}
|
|
pkgrel=1
|
|
pkgdesc='An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms'
|
|
arch=('x86_64')
|
|
url="https://bioconductor.org/packages/${_pkgname}"
|
|
license=('GPL')
|
|
depends=(
|
|
r
|
|
r-absseq
|
|
r-bayseq
|
|
r-biobase
|
|
r-biocgenerics
|
|
r-biocparallel
|
|
r-biomart
|
|
r-biostrings
|
|
r-corrplot
|
|
r-deseq2
|
|
r-dss
|
|
r-dt
|
|
r-edaseq
|
|
r-edger
|
|
r-genefilter
|
|
r-genomeinfodb
|
|
r-genomicalignments
|
|
r-genomicfeatures
|
|
r-genomicranges
|
|
r-gplots
|
|
r-harmonicmeanp
|
|
r-heatmaply
|
|
r-htmltools
|
|
r-httr
|
|
r-iranges
|
|
r-jsonlite
|
|
r-limma
|
|
r-locfit
|
|
r-log4r
|
|
r-magrittr
|
|
r-nbpseq
|
|
r-pander
|
|
r-qvalue
|
|
r-rmarkdown
|
|
r-rmdformats
|
|
r-rsamtools
|
|
r-rsqlite
|
|
r-rtracklayer
|
|
r-s4vectors
|
|
r-stringr
|
|
r-summarizedexperiment
|
|
r-survcomp
|
|
r-venndiagram
|
|
r-vsn
|
|
r-yaml
|
|
r-zoo
|
|
)
|
|
optdepends=(
|
|
r-biocmanager
|
|
r-bsgenome
|
|
r-knitr
|
|
r-rmysql
|
|
r-runit
|
|
r-tcc
|
|
)
|
|
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
|
sha256sums=('a')
|
|
|
|
build() {
|
|
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
|
}
|
|
|
|
package() {
|
|
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
|
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
|
}
|
|
# vim:set ts=2 sw=2 et:
|