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61 lines
1.1 KiB
Bash
61 lines
1.1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=monocle
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_pkgver=2.22.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
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r
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r-biobase
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r-biocgenerics
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r-biocviews
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r-combinat
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r-ddrtree
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r-densityclust
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r-dplyr
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r-fastica
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r-ggplot2
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r-hsmmsinglecell
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r-igraph
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r-irlba
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r-limma
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r-matrixstats
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r-pheatmap
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r-plyr
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r-proxy
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r-qlcmatrix
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r-rann
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r-rcpp
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r-reshape2
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r-rtsne
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r-slam
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r-stringr
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r-tibble
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r-vgam
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r-viridis
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)
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optdepends=(
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r-destiny
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r-hmisc
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r-knitr
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r-scater
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r-seurat
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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