mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
53 lines
1 KiB
Bash
53 lines
1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
|
|
|
_pkgname=NADfinder
|
|
_pkgver=1.18.0
|
|
pkgname=r-${_pkgname,,}
|
|
pkgver=${_pkgver//[:-]/.}
|
|
pkgrel=1
|
|
pkgdesc='Call wide peaks for sequencing data'
|
|
arch=('any')
|
|
url="https://bioconductor.org/packages/${_pkgname}"
|
|
license=('GPL')
|
|
depends=(
|
|
r
|
|
r-atacseqqc
|
|
r-baseline
|
|
r-biocgenerics
|
|
r-corrplot
|
|
r-csaw
|
|
r-empiricalbrownsmethod
|
|
r-genomeinfodb
|
|
r-genomicalignments
|
|
r-genomicranges
|
|
r-iranges
|
|
r-limma
|
|
r-metap
|
|
r-rsamtools
|
|
r-rtracklayer
|
|
r-s4vectors
|
|
r-signal
|
|
r-summarizedexperiment
|
|
r-trackviewer
|
|
)
|
|
optdepends=(
|
|
r-biocmanager
|
|
r-biocstyle
|
|
r-bsgenome.mmusculus.ucsc.mm10
|
|
r-knitr
|
|
r-rmarkdown
|
|
r-runit
|
|
r-testthat
|
|
)
|
|
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
|
sha256sums=('a')
|
|
|
|
build() {
|
|
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
|
}
|
|
|
|
package() {
|
|
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
|
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
|
}
|
|
# vim:set ts=2 sw=2 et:
|