mirror of
https://github.com/BioArchLinux/Packages.git
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58 lines
1.1 KiB
Bash
58 lines
1.1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=openCyto
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_pkgver=2.6.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Hierarchical Gating Pipeline for flow cytometry data'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('custom')
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depends=(
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r
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r-biobase
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r-biocgenerics
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r-clue
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r-data.table
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r-flowclust
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r-flowcore
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r-flowstats
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r-flowviz
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r-flowworkspace
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r-graph
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r-gtools
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r-ks
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r-ncdfflow
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r-plyr
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r-r.utils
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r-rbgl
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r-rcolorbrewer
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r-rcpp
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r-rrcov
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)
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optdepends=(
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r-cytoml
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r-flowworkspacedata
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r-ggcyto
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r-knitr
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r-markdown
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r-parallel
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r-rmarkdown
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r-testthat
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r-tools
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r-utils
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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