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63 lines
1.2 KiB
Bash
63 lines
1.2 KiB
Bash
# system requirements: MAFFT (>= 7.305), OligoArrayAux (>= 3.8), ViennaRNA(>= 2.4.1), MELTING (>= 5.1.1), Pandoc (>= 1.12.3)
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=openPrimeR
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_pkgver=1.16.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Multiplex PCR Primer Design and Analysis'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-ape
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r-biocgenerics
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r-biostrings
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r-decipher
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r-digest
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r-distr
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r-distrex
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r-dplyr
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r-fitdistrplus
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r-foreach
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r-genomicranges
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r-ggplot2
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r-hmisc
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r-iranges
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r-lpsolveapi
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r-magrittr
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r-openxlsx
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r-plyr
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r-rcolorbrewer
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r-reshape2
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r-s4vectors
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r-scales
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r-seqinr
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r-stringdist
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r-stringr
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r-uniqtag
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r-xml
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)
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optdepends=(
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r-devtools
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r-doparallel
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r-knitr
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r-learnr
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r-pander
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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