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57 lines
1.3 KiB
Bash
57 lines
1.3 KiB
Bash
# system requirements: RNASeqR only support Linux and macOS. Window is notsupported. Python2 is highly recommended. If your machine isPython3, make sure '2to3' command is available.
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=RNASeqR
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_pkgver=1.12.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='RNASeqR: an R package for automated two-group RNA-Seq analysis workflow'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
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r
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r-ballgown
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r-biostrings
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r-clusterprofiler
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r-corrplot
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r-deseq2
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r-dose
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r-edger
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r-factoextra
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r-factominer
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r-ggplot2
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r-gridextra
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r-org.hs.eg.db
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r-org.sc.sgd.db
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r-pathview
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r-performanceanalytics
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r-pheatmap
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r-rafalib
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r-reshape2
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r-reticulate
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r-rsamtools
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r-stringr
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r-systempiper
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r-systempiperdata
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)
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optdepends=(
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r-grid
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r-knitr
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r-png
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r-rmarkdown
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r-rnaseqrdata
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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