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62 lines
1.3 KiB
Bash
62 lines
1.3 KiB
Bash
# system requirements: GNU make
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=scGPS
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_pkgver=1.8.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-caret
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r-deseq2
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r-dplyr
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r-dynamictreecut
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r-fastcluster
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r-ggplot2
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r-glmnet
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r-locfit
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r-rcpp
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r-rcpparmadillo
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r-rcppparallel
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r-singlecellexperiment
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r-summarizedexperiment
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)
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optdepends=(
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r-biocparallel
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r-clusterprofiler
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r-cowplot
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r-dendextend
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r-devtools
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r-dose
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r-e1071
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r-knitr
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r-matrix
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r-networkd3
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r-org.hs.eg.db
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r-parallel
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r-rcolorbrewer
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r-reactomepa
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r-reshape2
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r-rmarkdown
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r-rtsne
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r-testthat
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r-wgcna
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r-xlsx
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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