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65 lines
1.2 KiB
Bash
65 lines
1.2 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=scTensor
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_pkgver=2.4.1
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
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r
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r-abind
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r-annotationdbi
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r-annotationhub
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r-biocmanager
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r-biocstyle
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r-category
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r-cctensor
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r-checkmate
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r-crayon
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r-dose
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r-ggplot2
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r-gostats
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r-heatmaply
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r-igraph
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r-knitr
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r-meshdbi
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r-meshr
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r-nntensor
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r-outliers
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r-plotly
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r-plotrix
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r-reactome.db
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r-reactomepa
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r-rmarkdown
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r-rsqlite
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r-rtensor
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r-s4vectors
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r-schex
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r-singlecellexperiment
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r-summarizedexperiment
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r-tagcloud
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r-visnetwork
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)
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optdepends=(
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r-homo.sapiens
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r-lrbasedbi
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r-sctgif
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r-seurat
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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