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91 lines
1.5 KiB
Bash
91 lines
1.5 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=Seurat
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_pkgver=4.0.6
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Tools for Single Cell Genomics'
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arch=('x86_64')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('MIT')
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depends=(
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r
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r-cowplot
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r-fitdistrplus
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r-future
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r-future.apply
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r-ggplot2
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r-ggrepel
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r-ggridges
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r-httr
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r-ica
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r-igraph
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r-irlba
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r-jsonlite
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r-leiden
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r-lmtest
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r-matrixstats
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r-miniui
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r-patchwork
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r-pbapply
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r-plotly
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r-png
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r-rann
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r-rcolorbrewer
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r-rcpp
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r-rcppannoy
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r-rcppeigen
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r-rcppprogress
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r-reticulate
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r-rlang
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r-rocr
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r-rtsne
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r-scales
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r-scattermore
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r-sctransform
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r-seuratobject
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r-shiny
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r-spatstat.core
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r-spatstat.geom
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r-tibble
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r-uwot
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)
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optdepends=(
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r-ape
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r-biobase
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r-biocgenerics
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r-deseq2
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r-enrichr
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r-genomeinfodb
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r-genomicranges
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r-ggrastr
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r-hdf5r
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r-iranges
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r-limma
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r-mast
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r-metap
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r-mixtools
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r-monocle
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r-rfast2
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r-rsvd
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r-rtracklayer
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r-s4vectors
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r-singlecellexperiment
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r-summarizedexperiment
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r-testthat
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r-vgam
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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