mirror of
https://github.com/BioArchLinux/Packages.git
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85 lines
1.4 KiB
Bash
85 lines
1.4 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=TCGAbiolinks
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_pkgver=2.22.2
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-biomart
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r-data.table
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r-downloader
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r-dplyr
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r-genomicranges
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r-ggplot2
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r-httr
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r-iranges
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r-jsonlite
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r-knitr
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r-plyr
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r-purrr
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r-r.utils
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r-readr
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r-rvest
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r-s4vectors
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r-stringr
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r-summarizedexperiment
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r-tcgabiolinksgui.data
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r-tibble
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r-tidyr
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r-xml
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r-xml2
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)
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optdepends=(
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r-affy
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r-biobase
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r-biocstyle
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r-c3net
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r-circlize
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r-clusterprofiler
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r-complexheatmap
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r-consensusclusterplus
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r-devtools
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r-dnet
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r-doparallel
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r-edaseq
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r-edger
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r-genefilter
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r-ggrepel
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r-grid
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r-gridextra
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r-igraph
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r-jpeg
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r-limma
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r-maftools
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r-minet
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r-parallel
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r-parmigene
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r-pathview
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r-png
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r-rmarkdown
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r-scales
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r-sesame
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r-suprahex
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r-survival
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r-survminer
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r-sva
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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