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81 lines
1.3 KiB
Bash
81 lines
1.3 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=tidybulk
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_pkgver=1.6.1
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Brings transcriptomics to the tidyverse'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-dplyr
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r-genomicranges
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r-lifecycle
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r-magrittr
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r-preprocesscore
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r-purrr
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r-readr
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r-rlang
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r-scales
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r-stringi
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r-stringr
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r-summarizedexperiment
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r-tibble
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r-tidyr
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r-tidyselect
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)
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optdepends=(
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r-annotationdbi
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r-betareg
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r-biocmanager
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r-biocstyle
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r-boot
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r-broom
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r-clusterprofiler
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r-covr
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r-deseq2
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r-devtools
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r-e1071
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r-edger
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r-functional
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r-ggally
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r-ggplot2
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r-ggrepel
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r-kernsmooth
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r-knitr
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r-limma
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r-markdown
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r-msigdbr
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r-org.hs.eg.db
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r-org.mm.eg.db
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r-pasilla
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r-qpdf
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r-rsubread
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r-rtsne
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r-s4vectors
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r-seurat
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r-survival
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r-survminer
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r-sva
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r-testthat
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r-tidyheatmap
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r-tidysummarizedexperiment
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r-uwot
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r-vctrs
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r-widyr
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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