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64 lines
1.3 KiB
Bash
64 lines
1.3 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=isomiRs
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_pkgver=1.30.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Analyze isomiRs and miRNAs from small RNA-seq"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('MIT')
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depends=(
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r-annotationdbi
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r-assertive.sets
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r-biobase
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r-biocgenerics
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r-broom
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r-cowplot
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r-degreport
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r-deseq2
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r-dplyr
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r-genomicranges
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r-ggally
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r-ggplot2
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r-gplots
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r-gridextra
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r-gtools
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r-iranges
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r-limma
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r-rcolorbrewer
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r-readr
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r-reshape
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r-rlang
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r-s4vectors
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r-stringr
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r-summarizedexperiment
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r-tibble
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r-tidyr
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)
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optdepends=(
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r-biocstyle
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r-knitr
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r-org.mm.eg.db
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r-pheatmap
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r-rmarkdown
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r-targetscan.hs.eg.db
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('95b301f966153c00b98359bb6a0986cd')
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b2sums=('f41937f7ca7df0495856663c132d850e2544c97df04f2e31009e2bddc078abf34f50f90e49876a39a2da8a1247f88ec3ab1b27d6dc1db70f1a15a2a18d1583c9')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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install -d "$pkgdir/usr/share/licenses/$pkgname"
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ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
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}
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