mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
Aim to be the bioinformatics repository with more and newer packages
fdaca18508
These packages have been removed from CRAN, but are required by other packages and thus cannot be removed from the repo. - r-assertive.base: dependency of r-autonomics and r-isomirs - r-assertive.files: dependency of r-autonomics - r-assertive.numbers: dependency of r-autonomics - r-assertive.sets: dependency of r-autonomics and r-isomirs - r-ensurer: dependency of r-tissueenrich - r-howmany: dependency of r-clusterexperiment - r-varfrompdb: dependency of r-nanotator - r-xml2r: dependency of r-nanotator |
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| .github | ||
| BioArchLinux | ||
| fail | ||
| lilac-extensions | ||
| logo | ||
| prepare | ||
| BioArchLinux.bibtex | ||
| CITATION.cff | ||
| CODE_OF_CONDUCT.md | ||
| LICENSE | ||
| README.md | ||
Packages Wiki Matrix Mirror Repo Status
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Usage
ArchLinux and ArchLinux based distributions
Add the following content to the /etc/pacman.conf
[bioarchlinux]
Server = https://repo.bioarchlinux.org/$arch
You can replace the https://repo.bioarchlinux.org/$arch with any mirror in mirrorlist
install GPG keyring to use bioarchlinux
# pacman-key --recv-keys B1F96021DB62254D
# pacman-key --finger B1F96021DB62254D
# pacman-key --lsign-key B1F96021DB62254D
update the database
# pacman -Syu
install any package
# pacman -S foo
Windows
You can use WSL to use our repo, see here
Docker
You can use docker to use our repo, see here
ISO
You can use ISO image via virtual machine software to use our repo, see here
non-root Linux users
You can use junest BioArchLinux image to use our repo, see here
Citation
Zhang G. Hu Y. Drobot V. Staal J. Yi Y. Elliot MG. 2022. BioArchLinux: bioinformatics community with Arch Linux. F1000Research 11: 809. https://doi.org/10.7490/f1000research.1119039.1