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fix bug and typo

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This commit is contained in:
sukanka 2022-11-06 10:13:44 +08:00
parent aba117a391
commit 381e415090
1 changed files with 17 additions and 11 deletions
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28
updater/depends_updater.py
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@ -78,7 +78,7 @@ class PkgInfo:
self.depends_changed = False
self.optdepends_changed = False
if self.bioc_verions == []:
if self.bioc_versions == []:
self.set_bioc_versions()
self.parse_pkgbuild()
desc = self.get_desc()
@ -120,7 +120,7 @@ class PkgInfo:
'=')[-1].strip().strip("'").strip('"')
break
depends = lilac.obtain_depends()
optdepends = lilac.obtain_optdepends()
optdepends = lilac.obtain_optdepends(parse_dict=False)
self.depends = depends
self.optdepends = optdepends
@ -129,7 +129,7 @@ class PkgInfo:
get new depends from CRAN or Bioconductor
'''
pkgname = self.pkgname
CRAN_URL = f"{self.cran_mirror}/src/contrib/PACKAGES"
CRAN_URL = f"{self.cran_meta_mirror}/src/contrib/PACKAGES"
# try cran first
r_cran = requests.get(CRAN_URL)
@ -167,7 +167,7 @@ class PkgInfo:
obtain new depends and optdepends from `desc`, and write them to `self`
'''
config = configparser.ConfigParser()
config.read_string('[pkg\n]'+desc)
config.read_string('[pkg]\n'+desc)
self.pkgver = config['pkg'].get('version')
r_deps = []
r_optdeps = []
@ -221,11 +221,16 @@ class PkgInfo:
self.depends_changed = True
# keep explanation of optdepends
if type(self.optdepends) == 'dict':
if sorted(self.new_optdepends) != sorted(self.optdepends.keys()):
if any(map(lambda x: ':' in x, self.optdepends)):
self.new_optdepends = [
x+': ' for x in self.new_optdepends if ':' not in x]
opt_dict = {pkg.strip(): desc.strip() for (pkg, desc) in
(item.split(':', 1) for item in self.optdepends)}
if sorted(self.new_optdepends) != sorted(opt_dict.keys()):
self.optdepends_changed = True
for i in range(len(self.new_optdepends)):
val = self.optdepends.get(self.new_optdepends[i])
val = opt_dict.get(self.optdepends[i])
if val:
self.new_optdepends[i] += ': '+val
else:
@ -257,7 +262,7 @@ class PkgInfo:
if optdepends_interval[0] > -1 and optdepends_interval[1] == -1:
if ')' in line:
# end optdepends
depends_interval[1] = i
optdepends_interval[1] = i
if not (depends_interval[1] < optdepends_interval[0] or optdepends_interval[1] < depends_interval[0]):
logging.error(
"depends and optdepends overlap, please fix it manually")
@ -267,12 +272,13 @@ class PkgInfo:
for i in range(depends_interval[0], depends_interval[1]):
lines[i] = ''
lines[depends_interval[1]] = '\n'.join(
['depends=(', '\n'.join([' ' + _ for _ in self.new_depends]), ')'])
['depends=(', '\n'.join([' ' + _ for _ in self.new_depends]), ')\n'])
if self.optdepends_changed:
for i in range(optdepends_interval[0], optdepends_interval[1]):
lines[i] = ''
lines[optdepends_interval[1]] = '\n'.join(
['optdepends=(', '\n'.join([' ' + _ for _ in self.new_optdepends]), ')'])
if self.new_optdepends:
lines[optdepends_interval[1]] = '\n'.join(
['optdepends=(', '\n'.join([' ' + _ for _ in self.new_optdepends]), ')\n'])
logging.info(f"Writing new PKGBUILD for {self.pkgname}")
with open("PKGBUILD", "w") as f: