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19
Dockerfile
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19
Dockerfile
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FROM archlinux:latest
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# import bioarchlinux keyring
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RUN pacman -Syu --noconfirm
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RUN pacman-key --recv-keys B1F96021DB62254D
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RUN pacman-key --finger B1F96021DB62254D
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RUN pacman-key --init
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RUN pacman-key --lsign-key B1F96021DB62254D
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# add bioarchlinux to pacman.conf
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RUN curl https://raw.githubusercontent.com/BioArchLinux/mirror/main/pacman.conf.bio -o /etc/pacman.conf
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RUN curl https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio -o /etc/pacman.d/mirrorlist.bio
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RUN sed -i '2,2s/# //g' /etc/pacman.d/mirrorlist.bio
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# install keyring and mirrorlist packages
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RUN pacman -Syu --noconfirm
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RUN pacman -S --noconfirm bioarchlinux-keyring
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RUN pacman -S --noconfirm --overwrite '*' bioarchlinux-mirrorlist
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RUN rm -rf /var/cache/pacman/pkg
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33
README.md
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33
README.md
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# BioArchLinux on Docker
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## Install docker and pull image
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Install [docker](https://www.docker.com/) and start it
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```
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docker pull bioarchlinux/bioarchlinux
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docker run -it --name container_name bioarchlinux/bioarchlinux
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```
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## Choose mirror
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then you need to choose a mirror of archlinux and bioarchlinux
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choose mirror of archlinux from [here](https://archlinux.org/mirrorlist/) and run the following command ( take sdu mirror as the example)
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```
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echo 'Server = https://mirrors.sdu.edu.cn/archlinux/$repo/os/$arch' > /etc/pacman.d/mirrorlist
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```
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choose mirror bioarchlinux from [here](https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio) and run the following command ( take sdu mirror as the example)
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```
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echo 'Server = https://mirrors.sdu.edu.cn/bioarchlinux/$arch' > /etc/pacman.d/mirrorlist.bio
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```
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## Use it
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Finally, you can install any packages from BioArchLinux
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```
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pacman -Syu
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pacman -S foo
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```
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8
dockerhub.service
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8
dockerhub.service
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[Unit]
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Description=docker updater
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Wants=dockerhub.timer
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[Service]
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User=root
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Type=simple
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ExecStart=/usr/share/lilac/docker/man_docker.sh
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9
dockerhub.timer
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dockerhub.timer
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[Unit]
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Description=Runs docker updater everyday
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[Timer]
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OnCalendar=*-*-* 02:00:00
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Unit=dockerhub.service
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[Install]
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WantedBy=multi-user.target
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8
gen_docker.sh
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gen_docker.sh
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#!/bin/bash
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docker build -t bioarchlinux:$(date "+%Y%m%d") .
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docker tag bioarchlinux:$(date "+%Y%m%d") bioarchlinux/bioarchlinux:$(date "+%Y%m%d")
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docker tag bioarchlinux:$(date "+%Y%m%d") bioarchlinux/bioarchlinux:latest
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docker push bioarchlinux/bioarchlinux:$(date "+%Y%m%d") -a
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docker rmi --force $(docker images -q)
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7
man_docker.sh
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man_docker.sh
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#!/bin/bash
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cd /usr/share/lilac/docker
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git pull
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./gen_docker.sh
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