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add: readme, script
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Kuoi
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2 changed files with 172 additions and 43 deletions
70
README.md
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70
README.md
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# BioArchLinux on junest
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## Introduction
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[junest](https://github.com/fsquillace/junest) can let users manage the software via pacman under any Linux distributions. Non-root users can use it to install pkgs from BioArchLinux.
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## Install
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### Requirements
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- bash
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- coreutils
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- git/unzip
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- curl/wget
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### Install
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```
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curl -O https://raw.githubusercontent.com/BioArchLinux/junest-img/main/biojunest.sh
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```
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or
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```
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wget https://raw.githubusercontent.com/BioArchLinux/junest-img/main/biojunest.sh
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```
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then
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```
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chmod +x biojunest.sh && ./biojunest
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```
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### Advanced
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You can also configure mirror, for example
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```
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./biojunest -m="https://mirrors.njupt.edu.cn/mirrors/bioarchlinux"
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```
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## Usage
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You should `source` your `~/.zshrc` or `~/.bashrc` files firstly, for example
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```
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source ~/.bashrc
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```
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To enter junest, you can choose one of the following commands
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```
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junest -f
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junest proot -f
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```
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Then you can enjoy pacman
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You can also use `sudoj` to replace `sudo` for using root privilege in host machine, for example
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```
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sudoj pacman -Syu
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```
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## Further information
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See [here](https://github.com/fsquillace/junest)
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145
biojunest.sh
145
biojunest.sh
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@ -2,54 +2,113 @@
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# This script downloads and installs junest with optional mirror and help options
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# Define the default mirror url
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MIRROR="https://repo.bioarchlinux.org"
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procarg () {
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MIRROR="https://repo.bioarchlinux.org"
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for arg in "$@"; do
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case $arg in
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-h)
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echo "Usage: biojunest [-arguments]"
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echo "Options:"
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echo " -h, show this help message and exit"
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echo " -m, set the mirror value"
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echo " example: -m=\"https://repo.bioarchlinux.org\""
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break
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return
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;;
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-m=*)
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MIRROR="${arg#*=}"
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;;
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*)
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echo "Invalid option: -$OPTARG" >&2
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break
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return
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;;
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esac
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done
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echo "$MIRROR"
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}
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# Parse the options using getopts
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while getopts "m:h" opt; do
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case $opt in
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m) # Set the mirror url to the argument of -m option
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MIRROR="$OPTARG"
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;;
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h) # Print the help message and exit
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echo "Usage: ./install [-m MIRROR] [-h]"
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echo " -m MIRROR Specify a mirror url to download junest from"
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echo " -h Show this help message and exit"
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exit 0
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;;
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\?) # Print an error message for invalid options and exit
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echo "Invalid option: -$OPTARG" >&2
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exit 1
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;;
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esac
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done
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# Check if curl and zip are available
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if command -v curl &> /dev/null && command -v zip &> /dev/null; then
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# Use curl to download the repository as a zip file and extract it
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curl -L https://github.com/fsquillace/junest/archive/refs/heads/master.zip -o ~/junest.zip
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unzip junest.zip -d ~/.local/share/junest
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get_command (){
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local cmdtype=""
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if command -v unzip &> /dev/null; then
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if command -v curl &> /dev/null; then
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cmdtype="zipcurl"
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elif command -v wget &> /dev/null; then
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cmdtype="zipwget"
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else
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echo "Error: curl or wget can\'t be found"
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return 1
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fi
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elif command -v git &> /dev/null; then
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if command -v curl &> /dev/null; then
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cmdtype="gitcurl"
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elif command -v wget &> /dev/null; then
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cmdtype="gitwget"
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else
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echo "Error: curl or wget can\'t be found"
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return 1
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fi
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else
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echo "Error: unzip or git can\'t be found"
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return 1
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fi
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echo "$cmdtype"
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}
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proc_junest (){
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if [ "$1" = "zipcurl" ] || [ "$1" = "zipwget" ] ; then
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if "$1" = "zipcurl"; then
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curl -L https://github.com/fsquillace/junest/archive/refs/heads/master.zip -o ~/junest.zip
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elif "$1" = "zipwget"; then
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wget https://github.com/fsquillace/junest/archive/refs/heads/master.zip -O ~/junest.zip
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else
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return 1
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fi
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unzip ~/junest.zip -d ~/.local/share/junest
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rm ~/junest.zip
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curl -L "$MIRROR"/junest/bioarchlinux-junest.tar.gz -o ~/bioarchlinux-junest.tar.gz
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export PATH=~/.local/share/junest/bin:$PATH
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junest s -i ~/bioarchlinux-junest.tar.gz
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echo "Please add `export PATH=~/.local/share/junest/bin:$PATH` to your .zshrc or .bashrc"
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exit 0
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elif [ "$1" = "gitcurl" ] || [ "$1" = "gitwget" ]; then
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git clone https://github.com/fsquillace/junest.git ~/.local/share/junest
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else
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echo "Error: Download junest!"
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return 1
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fi
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}
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# Check if wget and zip are available
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if command -v wget &> /dev/null && command -v zip &> /dev/null; then
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# Use wget to download the repository as a zip file and extract it
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wget https://github.com/fsquillace/junest/archive/refs/heads/master.zip -O junest.zip
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unzip junest.zip -d ~/.local/share/junest
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rm junest.zip
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wget "$MIRROR"/junest/bioarchlinux-junest.tar.gz -O ~/bioarchlinux-junest.tar.gz
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export PATH=~/.local/share/junest/bin:$PATH
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junest s -i ~/bioarchlinux-junest.tar.gz
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echo "Please add `export PATH=~/.local/share/junest/bin:$PATH` to your .zshrc or .bashrc"
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exit 0
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proc_img(){
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if [ "$1" = "gitcurl" ] || [ "$1" = "zipcurl" ]
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then
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curl -L "$2"/junest/bioarchlinux-junest.tar.gz -o ~/bioarchlinux-junest.tar.gz
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elif [ "$1" = "gitwget" ] || [ "$1" = "zipwget" ]
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then
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wget "$2"/junest/bioarchlinux-junest.tar.gz -O ~/bioarchlinux-junest.tar.gz
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else
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echo "Error:Download bioarchlinux img"
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return 1
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fi
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export PATH=~/.local/share/junest/bin:$PATH
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junest s -i ~/bioarchlinux-junest.tar.gz
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rm ~/bioarchlinux-junest.tar.gz
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}
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# If none of the commands are available, print an error message and exit with non-zero code
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echo "Error: curl/wget or zip are not available on this system."
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exit 1
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set_env () {
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lines="PATH=\"\$PATH:~/.local/share/junest/bin:~/.junest/usr/bin_wrappers\"
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JUNEST_ARGS=\"ns\""
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if [ -z "$JUNEST_ARGS" ]; then
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if [ -f "$1" ]; then
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echo "$lines" >> "$1"
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source "$1"
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fi
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fi
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}
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MIRROR=$(procarg "$@")
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cmdtype=$(get_command)
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proc_junest "$cmdtype"
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proc_img "$cmdtype" "$MIRROR"
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set_env ~/.bashrc
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set_env ~/.zshrc
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