fix ggmsal depends

BioArchLinux/r-ggmsa/PKGBUILD

@@ -22,6 +22,8 @@ depends=(
   r-rcolorbrewer
   r-seqmagick
   r-tidyr
+  r-statebins
+  r-ggtree
 )
 optdepends=(
   r-ape
@@ -29,7 +31,6 @@ optdepends=(
   r-cowplot
   r-gggenes
   r-ggnewscale
-  r-ggtree
   r-ggtreeextra
   r-kableextra
   r-knitr

BioArchLinux/r-ggmsa/lilac.yaml

@@ -14,6 +14,8 @@ repo_depends:
 - r-rcolorbrewer
 - r-seqmagick
 - r-tidyr
+- r-statebins
+- r-ggtree
 update_on:
 - regex: ggmsa_([\d._-]+).tar.gz
   source: regex

BioArchLinux/r-statebins/PKGBUILD

@@ -0,0 +1,35 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=statebins
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Create United States Uniform Cartogram Heatmaps'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-ggplot2
+  r-scales
+)
+optdepends=(
+  r-covr
+  r-rcolorbrewer
+  r-tinytest
+  r-viridis
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-statebins/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()

BioArchLinux/r-statebins/lilac.yaml

@@ -0,0 +1,10 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: starsareintherose
+repo_depends:
+- r-ggplot2
+- r-scales
+update_on:
+- regex: statebins_([\d._-]+).tar.gz
+  source: regex
+  url: https://cran.r-project.org/package=statebins