add fastqc

BioArchLinux/fastqc/PKGBUILD

@@ -0,0 +1,21 @@
+# Maintainer: Sedeer el-Showk <s.elshowk@netherrealm.net>
+
+pkgname=fastqc
+pkgver=0.11.9
+pkgrel=1
+pkgdesc='A quality control tool for high throughput sequence data.'
+arch=('any')
+url="http://www.bioinformatics.babraham.ac.uk/projects/fastqc"
+license=('GPL3')
+depends=('perl' 'java-environment>=6' 'ttf-dejavu')
+source=("http://www.bioinformatics.babraham.ac.uk/projects/$pkgname/${pkgname}_v$pkgver.zip")
+md5sums=('ee7901b681bb2762d75d5a56c7ec6958')
+
+package() {
+  mkdir $pkgdir/opt/
+  cp -r $srcdir/FastQC/ $pkgdir/opt/
+
+  mkdir -p "${pkgdir}/usr/bin/"
+  chmod 755 $pkgdir/opt/FastQC/fastqc
+  ln -s "/opt/FastQC/fastqc" "${pkgdir}/usr/bin/"
+}

BioArchLinux/fastqc/lilac.py

@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+    run_cmd(['updpkgsums'])
+
+def post_build():
+    git_add_files('PKGBUILD')
+    git_commit()

BioArchLinux/fastqc/lilac.yaml

@@ -0,0 +1,9 @@
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+build_prefix: extra-x86_64
+update_on:
+  - source: regex
+    url: "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
+    regex: 'Version (\d+.\d+.\d+) released'
+time_limit_hours: 4