add deps for jaspBsts

BioArchLinux/r-boom/PKGBUILD

@@ -0,0 +1,30 @@
+# system requirements: GNU Make, C++11
+# Maintainer: sukanka <su975853527@gmail.com>
+
+_pkgname=Boom
+_pkgver=0.9.10
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Bayesian Object Oriented Modeling'
+arch=('x86_64')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+)
+optdepends=(
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('403c1df9e3adbdf79b393c04cccfe99e6fbda352cce340eb5e2e65bcc61fa1f0')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-boom/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()

BioArchLinux/r-boom/lilac.yaml

@@ -0,0 +1,7 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+update_on:
+  - regex: Boom_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=Boom

BioArchLinux/r-boomspikeslab/PKGBUILD

@@ -0,0 +1,33 @@
+# Maintainer: sukanka <su975853527@gmail.com>
+
+_pkgname=BoomSpikeSlab
+_pkgver=1.2.5
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='MCMC for Spike and Slab Regression'
+arch=('x86_64')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+  r-boom
+)
+optdepends=(
+  r-igraph
+  r-mass
+  r-mlbench
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('bc88ad95075b91799476e9e56281e4bf421106601acdbee5de783c9048b22bf8')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-boomspikeslab/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()

BioArchLinux/r-boomspikeslab/lilac.yaml

@@ -0,0 +1,9 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+repo_depends:
+  - r-boom
+update_on:
+  - regex: BoomSpikeSlab_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=BoomSpikeSlab

BioArchLinux/r-bsts/PKGBUILD

@@ -0,0 +1,33 @@
+# Maintainer: sukanka <su975853527@gmail.com>
+
+_pkgname=bsts
+_pkgver=0.9.8
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Bayesian Structural Time Series'
+arch=('x86_64')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+  r-boom
+  r-boomspikeslab
+  r-xts
+  r-zoo
+)
+optdepends=(
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('8c8ef3cd2bdb6d23fe72c74971ceb88847d215091bdc76fae3765f9b99430090')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-bsts/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()

BioArchLinux/r-bsts/lilac.yaml

@@ -0,0 +1,12 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+repo_depends:
+  - r-boom
+  - r-boomspikeslab
+  - r-xts
+  - r-zoo
+update_on:
+  - regex: bsts_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=bsts