mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
r-*: avoid repeating package name in pkgdesc
This commit is contained in:
Pekka Ristola
parent
b7a2ebdac0
commit
47920515a5
79 changed files with 159 additions and 48 deletions
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@ -5,7 +5,7 @@ _pkgver=1.0.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="adverSCarial, generate and analyze the vulnerability of scRNA-seq classifiers to adversarial attacks"
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pkgdesc="generate and analyze the vulnerability of scRNA-seq classifiers to adversarial attacks"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(MIT)
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@ -15,3 +15,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -6,7 +6,7 @@ _pkgver=1.10.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=3
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pkgdesc="biodb, a library and a development framework for connecting to chemical and biological databases"
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pkgdesc="a library and a development framework for connecting to chemical and biological databases"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(AGPL3)
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@ -31,4 +31,4 @@ update_on:
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md5: true
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- alias: r
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- source: manual
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manual: 1
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manual: 2
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@ -5,7 +5,7 @@ _pkgver=1.6.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="biodbExpasy, a library for connecting to Expasy ENZYME database."
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pkgdesc="a library for connecting to Expasy ENZYME database."
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(AGPL3)
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@ -15,3 +15,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -6,7 +6,7 @@ _pkgver=1.8.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="biodbHmdb, a library for connecting to the HMDB Database"
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pkgdesc="a library for connecting to the HMDB Database"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(AGPL3)
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@ -16,3 +16,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -5,7 +5,7 @@ _pkgver=1.6.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="biodbNcbi, a library for connecting to NCBI Databases."
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pkgdesc="a library for connecting to NCBI Databases."
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(AGPL3)
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@ -15,3 +15,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -5,7 +5,7 @@ _pkgver=1.6.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="biodbNci, a library for connecting to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database"
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pkgdesc="a library for connecting to the National Cancer Institute (USA) CACTUS Database"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(AGPL3)
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@ -7,7 +7,10 @@ sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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r_pre_build(_G)
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r_pre_build(
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_G,
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expect_title = "biodbNci, a library for connecting to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database",
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)
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def post_build():
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git_pkgbuild_commit()
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@ -16,3 +16,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -5,7 +5,7 @@ _pkgver=1.4.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="ccImpute: an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data (https://doi.org/10.1186/s12859-022-04814-8)"
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pkgdesc="an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(GPL3)
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@ -7,7 +7,10 @@ sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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r_pre_build(_G)
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r_pre_build(
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_G,
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expect_title = "ccImpute: an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data (https://doi.org/10.1186/s12859-022-04814-8)",
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)
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def post_build():
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git_pkgbuild_commit()
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@ -16,3 +16,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -5,7 +5,7 @@ _pkgver=1.0.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="compSPOT: Tool for identifying and comparing significantly mutated genomic hotspots"
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pkgdesc="Tool for identifying and comparing significantly mutated genomic hotspots"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(Artistic2.0)
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@ -17,3 +17,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -7,7 +7,10 @@ sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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r_pre_build(_G)
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r_pre_build(
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_G,
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expect_title = "Deming, Theil-Sen, Passing-Bablock and Total Least Squares Regression",
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)
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def post_build():
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git_pkgbuild_commit()
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@ -5,7 +5,7 @@ _pkgver=1.2.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="DESpace: a framework to discover spatially variable genes"
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pkgdesc="a framework to discover spatially variable genes"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(GPL3)
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@ -29,3 +29,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -5,7 +5,7 @@ _pkgver=1.4.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="EpiMix: an integrative tool for the population-level analysis of DNA methylation"
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pkgdesc="an integrative tool for the population-level analysis of DNA methylation"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(GPL3)
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@ -44,3 +44,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -5,7 +5,7 @@ _pkgver=1.2.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="FeatSeekR an R package for unsupervised feature selection"
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pkgdesc="an R package for unsupervised feature selection"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(GPL3)
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@ -7,7 +7,10 @@ sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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r_pre_build(_G)
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r_pre_build(
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_G,
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expect_title = "FeatSeekR an R package for unsupervised feature selection",
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)
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def post_build():
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git_pkgbuild_commit()
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@ -14,3 +14,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -7,7 +7,7 @@ _pkgver=2.14.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=3
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pkgdesc="flowCore: Basic structures for flow cytometry data"
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pkgdesc="Basic structures for flow cytometry data"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(Artistic2.0)
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@ -21,5 +21,7 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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update_on_build:
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- pkgbase: r-cytolib
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@ -5,7 +5,7 @@ _pkgver=1.0.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="gDRtestData - R data package with testing dose reponse data"
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pkgdesc="R data package with testing dose reponse data"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(Artistic2.0)
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@ -12,3 +12,5 @@ update_on:
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repo: bioc-data-experiment
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -6,7 +6,7 @@ _pkgver=1.8.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="GEOexplorer: a webserver for gene expression analysis and visualisation"
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pkgdesc="a webserver for gene expression analysis and visualisation"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(GPL3)
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@ -41,3 +41,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -5,7 +5,7 @@ _pkgver=1.6.1
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="GRaNIE: Reconstruction cell type specific gene regulatory networks including enhancers using chromatin accessibility and RNA-seq data"
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pkgdesc="Reconstruction cell type specific gene regulatory networks including enhancers using chromatin accessibility and RNA-seq data"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(Artistic2.0)
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@ -45,3 +45,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -6,7 +6,7 @@ _pkgver=2.18.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=5
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pkgdesc="hgu95av2cdf"
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pkgdesc="A package containing an environment representing the HG_U95Av2.CDF file"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('LGPL-2.0-or-later')
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@ -7,7 +7,10 @@ sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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r_pre_build(_G)
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r_pre_build(
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_G,
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expect_title = "hgu95av2cdf",
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)
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def post_build():
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git_pkgbuild_commit()
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@ -11,4 +11,4 @@ update_on:
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md5: true
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- alias: r
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- source: manual
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manual: 1
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manual: 2
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@ -5,7 +5,7 @@ _pkgver=1.2.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="HiCool"
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pkgdesc="Processing Hi-C raw data within R"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(MIT)
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@ -7,7 +7,10 @@ sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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r_pre_build(_G)
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r_pre_build(
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_G,
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expect_title = "HiCool",
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)
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def post_build():
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git_pkgbuild_commit()
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@ -24,3 +24,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -5,7 +5,7 @@ _pkgver=1.0.1
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="IsoBayes: Single Isoform protein inference Method via Bayesian Analyses"
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pkgdesc="Single Isoform protein inference Method via Bayesian Analyses"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(GPL3)
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@ -23,3 +23,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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|
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@ -5,7 +5,7 @@ _pkgver=1.2.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Mariner: Explore the Hi-Cs"
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pkgdesc="Explore the Hi-Cs"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(GPL3)
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@ -38,3 +38,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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|
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@ -5,7 +5,7 @@ _pkgver=1.2.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="mbQTL: A package for SNP-Taxa mGWAS analysis"
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pkgdesc="A package for SNP-Taxa mGWAS analysis"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(MIT)
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@ -18,3 +18,5 @@ update_on:
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repo: bioc
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md5: true
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- alias: r
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- source: manual
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manual: 1
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@ -5,7 +5,7 @@ _pkgver=1.0.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="MICSQTL (Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci)"
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pkgdesc="Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(GPL3)
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|
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@ -7,7 +7,10 @@ sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
|
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def pre_build():
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r_pre_build(_G)
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||||
r_pre_build(
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||||
_G,
|
||||
expect_title = "MICSQTL (Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci)",
|
||||
)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -24,3 +24,5 @@ update_on:
|
|||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ _pkgver=1.2.0
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=2
|
||||
pkgdesc="MsQuality - Quality metric calculation from Spectra and MsExperiment objects"
|
||||
pkgdesc="Quality metric calculation from Spectra and MsExperiment objects"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(GPL3)
|
||||
|
|
|
|||
|
|
@ -27,3 +27,5 @@ update_on:
|
|||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ _pkgver=1.0.0
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=2
|
||||
pkgdesc="multiWGCNA"
|
||||
pkgdesc="An R package for deeping mining gene co-expression networks in multi-trait expression data"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(GPL3)
|
||||
|
|
|
|||
|
|
@ -7,7 +7,10 @@ sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
|||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
r_pre_build(_G)
|
||||
r_pre_build(
|
||||
_G,
|
||||
expect_title = "multiWGCNA",
|
||||
)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -28,3 +28,5 @@ update_on:
|
|||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ _pkgver=1.4.0
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=2
|
||||
pkgdesc="RegioneReloaded: Multiple Association for Genomic Region Sets"
|
||||
pkgdesc="Multiple Association for Genomic Region Sets"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(Artistic2.0)
|
||||
|
|
|
|||
|
|
@ -19,3 +19,5 @@ update_on:
|
|||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ _pkgver=1.4.0
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=2
|
||||
pkgdesc="RESOLVE: An R package for the efficient analysis of mutational signatures from cancer genomes"
|
||||
pkgdesc="An R package for the efficient analysis of mutational signatures from cancer genomes"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(Apache)
|
||||
|
|
|
|||
|
|
@ -26,3 +26,5 @@ update_on:
|
|||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ _pkgver=1.2.0
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=2
|
||||
pkgdesc="RETROFIT: Reference-free deconvolution of cell mixtures in spatial transcriptomics"
|
||||
pkgdesc="Reference-free deconvolution of cell mixtures in spatial transcriptomics"
|
||||
arch=(x86_64)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(GPL3)
|
||||
|
|
|
|||
|
|
@ -12,3 +12,5 @@ update_on:
|
|||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ _pkgver=1.6.0
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=2
|
||||
pkgdesc="RolDE: Robust longitudinal Differential Expression"
|
||||
pkgdesc="Robust longitudinal Differential Expression"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(GPL3)
|
||||
|
|
|
|||
|
|
@ -17,3 +17,5 @@ update_on:
|
|||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ _pkgver=1.2.0
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=2
|
||||
pkgdesc="scFeatures: Multi-view representations of single-cell and spatial data for disease outcome prediction"
|
||||
pkgdesc="Multi-view representations of single-cell and spatial data for disease outcome prediction"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(GPL3)
|
||||
|
|
|
|||
|
|
@ -35,3 +35,5 @@ update_on:
|
|||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ _pkgver=1.4.0
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=2
|
||||
pkgdesc="Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences"
|
||||
pkgdesc="Single-Cell Immunoglobulin Filtering of Sanger Sequences"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(MIT)
|
||||
|
|
|
|||
|
|
@ -27,3 +27,5 @@ update_on:
|
|||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ _pkgver=1.2.0
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=2
|
||||
pkgdesc="SGCP: A semi-supervised pipeline for gene clustering using self-training approach in gene co-expression networks"
|
||||
pkgdesc="A semi-supervised pipeline for gene clustering using self-training approach in gene co-expression networks"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(GPL3)
|
||||
|
|
|
|||
|
|
@ -29,3 +29,5 @@ update_on:
|
|||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -6,7 +6,7 @@ _pkgver=2.8.2
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc="spatialHeatmap"
|
||||
pkgdesc="Creating spatial heatmaps from R and Shiny"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(Artistic2.0)
|
||||
|
|
|
|||
|
|
@ -7,7 +7,10 @@ sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
|||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
r_pre_build(_G)
|
||||
r_pre_build(
|
||||
_G,
|
||||
expect_title = "spatialHeatmap",
|
||||
)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -40,3 +40,5 @@ update_on:
|
|||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ _pkgver=1.14.1
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc="spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data"
|
||||
pkgdesc="an R/Bioconductor package to visualize spatially-resolved transcriptomics data"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(Artistic2.0)
|
||||
|
|
|
|||
|
|
@ -44,3 +44,5 @@ update_on:
|
|||
repo: bioc-data-experiment
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ _pkgver=1.4.0
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=2
|
||||
pkgdesc="stJoincount - Join count statistic for quantifying spatial correlation between clusters"
|
||||
pkgdesc="Join count statistic for quantifying spatial correlation between clusters"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(MIT)
|
||||
|
|
|
|||
|
|
@ -21,3 +21,5 @@ update_on:
|
|||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ _pkgver=1.30.0
|
|||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=2
|
||||
pkgdesc="tximportData"
|
||||
pkgdesc="provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=(GPL)
|
||||
|
|
|
|||
|
|
@ -7,7 +7,10 @@ sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
|||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
r_pre_build(_G)
|
||||
r_pre_build(
|
||||
_G,
|
||||
expect_title = "tximportData",
|
||||
)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -8,3 +8,5 @@ update_on:
|
|||
repo: bioc-data-experiment
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: manual
|
||||
manual: 1
|
||||
|
|
|
|||
|
|
@ -230,11 +230,13 @@ class CheckConfig:
|
|||
expect_license: str = None,
|
||||
expect_needscompilation: bool = None,
|
||||
expect_systemrequirements: str = None,
|
||||
expect_title: str = None,
|
||||
ignore_fortran_files: bool = False,
|
||||
):
|
||||
self.expect_license = expect_license
|
||||
self.expect_needscompilation = expect_needscompilation
|
||||
self.expect_systemrequirements = expect_systemrequirements
|
||||
self.expect_title = expect_title
|
||||
self.ignore_fortran_files = ignore_fortran_files
|
||||
|
||||
def check_default_pkgs(pkg: Pkgbuild, desc: Description, cfg: CheckConfig):
|
||||
|
|
@ -338,8 +340,23 @@ def check_license(pkg: Pkgbuild, desc: Description, cfg: CheckConfig):
|
|||
raise CheckFailed(f"Unknown license: {desc.license}. Consider setting CheckConfig.expect_license")
|
||||
|
||||
def check_pkgdesc(pkg: Pkgbuild, desc: Description, cfg: CheckConfig):
|
||||
if pkg.pkgdesc != desc.title:
|
||||
raise CheckFailed(f"Wrong pkgdesc, expected '{desc.title}'")
|
||||
title = desc.title
|
||||
title_lower = title.lower()
|
||||
name_lower = pkg._pkgname.lower()
|
||||
# detect and remove package name from the title
|
||||
for sep in [",", ":", " -"]:
|
||||
prefix = f"{name_lower}{sep} "
|
||||
if title_lower.startswith(prefix):
|
||||
title = title[len(prefix):]
|
||||
break
|
||||
|
||||
if cfg.expect_title is not None:
|
||||
if pkg.pkgdesc == title:
|
||||
raise CheckFailed("Unnecessary expect_title")
|
||||
elif cfg.expect_title != desc.title:
|
||||
raise CheckFailed(f"Title has changed: {desc.title}")
|
||||
elif pkg.pkgdesc != title:
|
||||
raise CheckFailed(f"Wrong pkgdesc, expected '{title}'")
|
||||
|
||||
def check_arch(pkg: Pkgbuild, desc: Description, cfg: CheckConfig):
|
||||
if cfg.expect_needscompilation is not None:
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue