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53 lines
1.2 KiB
Bash
53 lines
1.2 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=MICSQTL
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_pkgver=1.0.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(GPL3)
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depends=(
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r-biocparallel
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r-dirmult
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r-ggplot2
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r-ggpubr
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r-ggridges
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r-glue
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r-magrittr
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r-nnls
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r-purrr
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r-s4vectors
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r-summarizedexperiment
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r-tca
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r-toast
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)
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checkdepends=(
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r-testthat
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)
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optdepends=(
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r-biocstyle
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r-knitr
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('ec49e08df014da6955d2b6ab7dc77d3b')
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b2sums=('7d7d888e1233711591ce8f57c8f230539b3542a7de78330f0e669f8ffb923f10a264c649fca1e77b9017d4f3f1927d684db4c67a19189a6b2bed64656d56bb44')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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