BioArchLinux/Packages
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Merge remote-tracking branch 'refs/remotes/origin/master'

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Kuoi 2023-03-22 13:33:16 +08:00
commit 5c458a5558
4 changed files with 5 additions and 5 deletions
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4
BioArchLinux/bioarchlinux-mirrorlist/PKGBUILD
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@ -1,7 +1,7 @@
# Maintainer: Guoyi # Maintainer: Guoyi
pkgname=bioarchlinux-mirrorlist pkgname=bioarchlinux-mirrorlist
pkgver=2023.02.09 pkgver=2023.03.22
pkgrel=1 pkgrel=1
pkgdesc="BioArchLinux mirror list for use by pacman" pkgdesc="BioArchLinux mirror list for use by pacman"
arch=('any') arch=('any')
@ -9,7 +9,7 @@ url="https://github.com/BioArchLinux/mirror"
license=('GPL') license=('GPL')
backup=(etc/pacman.d/mirrorlist.bio) backup=(etc/pacman.d/mirrorlist.bio)
source=(https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio) source=(https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio)
sha256sums=('8a90984620549313c521f12b8b4dea49275af9056959d966973f97a97ce41c63') sha256sums=('bf34baf5b9b662e63a714946c9de8548c85daab14e4f10ba570234bb8a723228')
pkgver(){ pkgver(){
curl -sSi https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio | grep 'date' | sed 's/Jan/01/g;s/Feb/02/g;s/Mar/03/g;s/Apr/04/g;s/May/05/g;s/Jun/06/g;s/Jul/07/g;s/Aug/08/g;s/Sep/09/g;s/Oct/10/g;s/Nov/11/g;s/Dec/12/g' | awk '{print $5,$4,$3}' | sed 's/ /./g' curl -sSi https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio | grep 'date' | sed 's/Jan/01/g;s/Feb/02/g;s/Mar/03/g;s/Apr/04/g;s/May/05/g;s/Jun/06/g;s/Jul/07/g;s/Aug/08/g;s/Sep/09/g;s/Oct/10/g;s/Nov/11/g;s/Dec/12/g' | awk '{print $5,$4,$3}' | sed 's/ /./g'
} }

2
BioArchLinux/bwa/PKGBUILD
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@ -2,7 +2,7 @@
pkgname=bwa pkgname=bwa
pkgver=0.7.17.r54.g139f68f pkgver=0.7.17.r54.g139f68f
pkgrel=4 pkgrel=5
pkgdesc="Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome. https://doi.org/10.1093/bioinformatics/btp324" pkgdesc="Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome. https://doi.org/10.1093/bioinformatics/btp324"
arch=('x86_64') arch=('x86_64')
url="http://bio-bwa.sourceforge.net/" url="http://bio-bwa.sourceforge.net/"

2
BioArchLinux/freebayes/PKGBUILD
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@ -2,7 +2,7 @@
# Contributor: Clint Valentine <valentine.clint@gmail.com> # Contributor: Clint Valentine <valentine.clint@gmail.com>
pkgname=freebayes pkgname=freebayes
pkgver=1.3.7 pkgver=1.3.7
pkgrel=0 pkgrel=1
pkgdesc="About Bayesian haplotype-based genetic polymorphism discovery and genotyping" pkgdesc="About Bayesian haplotype-based genetic polymorphism discovery and genotyping"
arch=('x86_64') arch=('x86_64')
url="https://github.com/freebayes/freebayes" url="https://github.com/freebayes/freebayes"

2
BioArchLinux/seqlib/PKGBUILD
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@ -1,6 +1,6 @@
pkgname=seqlib pkgname=seqlib
pkgver=1.2.0 pkgver=1.2.0
pkgrel=8 pkgrel=9
pkgdesc="C++ htslib/bwa-mem/fermi interface for interrogating sequence data" pkgdesc="C++ htslib/bwa-mem/fermi interface for interrogating sequence data"
arch=('i686' 'x86_64') arch=('i686' 'x86_64')
url="https://github.com/walaj/SeqLib" url="https://github.com/walaj/SeqLib"