r-redisparam: init

BioArchLinux/r-redisparam/PKGBUILD

@@ -0,0 +1,44 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=RedisParam
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Provide a 'redis' back-end for BiocParallel"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(Artistic2.0)
+depends=(
+  r-biocparallel
+  r-futile.logger
+  r-redux
+  r-withr
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('cf24018f96bc9de6286d2806dfd7bfaa')
+sha256sums=('5ec7a73f0109edf45a41a8922246a6ff183f0fce305156101b56725ab4132041')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}

BioArchLinux/r-redisparam/lilac.py

@@ -0,0 +1,17 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(
+        _G,
+        expect_systemrequirements = "hiredis",
+    )
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-redisparam/lilac.yaml

@@ -0,0 +1,17 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-biocparallel
+- r-futile.logger
+- r-redux
+- r-withr
+repo_makedepends:
+- r-testthat
+update_on:
+- source: rpkgs
+  pkgname: RedisParam
+  repo: bioc
+  md5: true
+- alias: r

BioArchLinux/r-redux/PKGBUILD

@@ -0,0 +1,44 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=redux
+_pkgver=1.1.4
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="R Bindings to 'hiredis'"
+arch=(x86_64)
+url="https://cran.r-project.org/package=${_pkgname}"
+license=(GPL2)
+depends=(
+  hiredis
+  r-r6
+  r-storr
+)
+checkdepends=(
+  r-sys
+  r-testthat
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-sys
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('13eb2a35ff97ad02e09b1e42ec8cff7c')
+sha256sums=('201d7c89840f3d698fe94ec3fe4088a19c2a9dc19ee7ec300d5deeadd2606fb1')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}

BioArchLinux/r-redux/lilac.py

@@ -0,0 +1,17 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(
+        _G,
+        expect_systemrequirements = "hiredis",
+    )
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-redux/lilac.yaml

@@ -0,0 +1,20 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-r6
+- r-storr
+repo_makedepends:
+- r-sys
+- r-testthat
+update_on:
+- source: rpkgs
+  pkgname: redux
+  repo: cran
+  md5: true
+- alias: r
+- source: alpmfiles
+  pkgname: hiredis
+  filename: usr/lib/libhiredis\.so\.([^.]+\.[^.]+\.[^.]+)
+  repo: extra

BioArchLinux/r-storr/PKGBUILD

@@ -0,0 +1,67 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=storr
+_pkgver=1.2.5
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Simple Key Value Stores"
+arch=(x86_64)
+url="https://cran.r-project.org/package=${_pkgname}"
+license=(MIT)
+depends=(
+  r-digest
+  r-r6
+)
+checkdepends=(
+  postgresql
+  r-dbi
+  r-mockr
+  r-rpostgres
+  r-rsqlite
+  r-testthat
+)
+optdepends=(
+  r-dbi
+  r-knitr
+  r-mockr
+  r-progress
+  r-rbenchmark
+  r-rmarkdown
+  r-rpostgres
+  r-rsqlite
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('0bec8b9e53ad575bd9a20b68a798f853')
+sha256sums=('4224c3991d9c043a45ce530d0698d7f2cdca231b26fe31b45e0db865026e5f63')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+
+  # create database for tests
+  export PGDATA="$srcdir/db"
+  export PGHOST="$srcdir/host"
+  mkdir "$PGHOST"
+  initdb
+  pg_ctl -o "-h '' -k ${PGHOST@Q}" start
+  createdb
+
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+
+  # shut down test database
+  pg_ctl stop
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}

BioArchLinux/r-storr/lilac.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-storr/lilac.yaml

@@ -0,0 +1,19 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-digest
+- r-r6
+repo_makedepends:
+- r-dbi
+- r-mockr
+- r-rpostgres
+- r-rsqlite
+- r-testthat
+update_on:
+- source: rpkgs
+  pkgname: storr
+  repo: cran
+  md5: true
+- alias: r