r-delocal: init

BioArchLinux/r-delocal/PKGBUILD

@@ -0,0 +1,43 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=DELocal
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Identifies differentially expressed genes with respect to other local genes"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(MIT)
+depends=(
+  r-deseq2
+  r-dplyr
+  r-ggplot2
+  r-limma
+  r-matrixstats
+  r-reshape2
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biomart
+  r-knitr
+  r-pcredux
+  r-rmarkdown
+  r-stringr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('6f595f5306f040c92e53f70db5fb4d81')
+sha256sums=('85e1ceb9812f18727fa12bbc17691e3bfe89dc6686900d14245a773a1cce1395')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}

BioArchLinux/r-delocal/lilac.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-delocal/lilac.yaml

@@ -0,0 +1,18 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-deseq2
+- r-dplyr
+- r-ggplot2
+- r-limma
+- r-matrixstats
+- r-reshape2
+- r-summarizedexperiment
+update_on:
+- source: rpkgs
+  pkgname: DELocal
+  repo: bioc
+  md5: true
+- alias: r