r-performance: use metadata checks

BioArchLinux/r-performance/PKGBUILD

@@ -1,20 +1,48 @@
-# Maintainer: Hu Butui <hot123tea123@gmail.com>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: Hu Butui <hot123tea123@gmail.com>
 
 _pkgname=performance
 _pkgver=0.10.5
 pkgname=r-${_pkgname,,}
-pkgver=0.10.5
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Assessment of Regression Models Performance'
+pkgdesc="Assessment of Regression Models Performance"
-arch=('any')
+arch=(any)
 url="https://cran.r-project.org/package=${_pkgname}"
-license=('GPL')
+license=(GPL3)
 depends=(
-  r
   r-bayestestr
   r-datawizard
   r-insight
 )
+checkdepends=(
+  r-aer
+  r-afex
+  r-bayesfactor
+  r-betareg
+  r-bigutilsr
+  r-curl
+  r-dbscan
+  r-estimatr
+  r-fixest
+  r-glmmtmb
+  r-httr
+  r-ics
+  r-icsoutlier
+  r-islr
+  r-ivreg
+  r-lavaan
+  r-lme4
+  r-mclogit
+  r-metafor
+  r-nonnest2
+  r-ordinal
+  r-parameters
+  r-pscl
+  r-rstanarm
+  r-rstantools
+  r-testthat
+)
 optdepends=(
   r-aer
   r-afex
@@ -23,7 +51,6 @@ optdepends=(
   r-betareg
   r-bigutilsr
   r-blavaan
-  r-boot
   r-brms
   r-car
   r-compquadform
@@ -36,7 +63,6 @@ optdepends=(
   r-gamm4
   r-ggplot2
   r-glmmtmb
-  r-graphics
   r-hmisc
   r-httr
   r-ics
@@ -47,23 +73,19 @@ optdepends=(
   r-lme4
   r-lmtest
   r-loo
-  r-mass
-  r-matrix
   r-mclogit
   r-mclust
   r-metadat
   r-metafor
-  r-mgcv
   r-mlogit
   r-multimode
-  r-nlme
   r-nonnest2
   r-ordinal
-  r-parallel
   r-parameters
   r-patchwork
   r-pscl
   r-psych
+  r-qqplotr
   r-randomforest
   r-rmarkdown
   r-rstanarm
@@ -71,21 +93,33 @@ optdepends=(
   r-sandwich
   r-see
   r-survey
-  r-survival
   r-testthat
   r-tweedie
   r-vgam
   r-withr
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('79b638bc9062c40848cb38670b980c20')
 sha256sums=('d91c0dc1ab7e32868c750357b3af4e98f2bf972f724d9f6e50de4015c56f8caf')
 
+prepare() {
+  # skip failing tests
+  cd "$_pkgname/tests/testthat"
+  sed -i '/"brms_mixed_1"/i\ \ skip("fails")' test-icc.R
+  sed -i '/"model_performance.brmsfit"/a\ \ skip("fails")' test-model_performance.bayesian.R
+}
+
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-performance/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(_G)
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-performance/lilac.yaml

@@ -1,12 +1,41 @@
 build_prefix: extra-x86_64
 maintainers:
-- github: hubutui
+- github: pekkarr
+  email: pekkarr@protonmail.com
 repo_depends:
 - r-bayestestr
 - r-datawizard
 - r-insight
+repo_makedepends:
+- r-aer
+- r-afex
+- r-bayesfactor
+- r-betareg
+- r-bigutilsr
+- r-curl
+- r-dbscan
+- r-estimatr
+- r-fixest
+- r-glmmtmb
+- r-httr
+- r-ics
+- r-icsoutlier
+- r-islr
+- r-ivreg
+- r-lavaan
+- r-lme4
+- r-mclogit
+- r-metafor
+- r-nonnest2
+- r-ordinal
+- r-parameters
+- r-pscl
+- r-rstanarm
+- r-rstantools
+- r-testthat
 update_on:
-- regex: performance_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: performance
-  url: https://cran.r-project.org/package=performance
+  repo: cran
+  md5: true
 - alias: r