BioArchLinux/Packages
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r-*: use SPDX license identifier for "GPL-3"

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This commit is contained in:
Pekka Ristola 2024-01-17 21:45:55 +02:00
parent d80d3edd42
commit 9424964335
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GPG key ID: 2C20BE716E05213E
175 changed files with 175 additions and 175 deletions
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2
BioArchLinux/r-acde/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Artificial Components Detection of Differentially Expressed Genes"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-additivitytests/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=6
pkgdesc="Additivity Tests in the Two Way Anova with Single Sub-Class Numbers"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-assertthat/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=14
pkgdesc="Easy Pre and Post Assertions"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-atacseqtfea/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Transcription Factor Enrichment Analysis for ATAC-seq"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocgenerics
r-dplyr

2
BioArchLinux/r-basicstan/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Stan implementation of BASiCS"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-basics
r-glmgampoi

2
BioArchLinux/r-beachmat.hdf5/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="beachmat bindings for HDF5-backed matrices"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-beachmat
r-delayedarray

2
BioArchLinux/r-benford.analysis/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Benford Analysis for Data Validation and Forensic Analytics"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-data.table
)

2
BioArchLinux/r-benfordtests/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Statistical Tests for Evaluating Conformity to Benford's Law"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-bigassertr/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="Assertion and Message Functions"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-bigrquery/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=5
pkgdesc="An Interface to Google's 'BigQuery' 'API'"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-assertthat
r-bit64

2
BioArchLinux/r-bigutilsr/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Utility Functions for Large-scale Data"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-bigassertr
r-bigparallelr

2
BioArchLinux/r-biocsingular/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Singular Value Decomposition for Bioconductor Packages"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-beachmat
r-biocgenerics

2
BioArchLinux/r-bionero/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Biological Network Reconstruction Omnibus"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-complexheatmap

2
BioArchLinux/r-bookdown/PKGBUILD
View file

@ -11,7 +11,7 @@ pkgrel=1
pkgdesc="Authoring Books and Technical Documents with R Markdown"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
pandoc
r-htmltools

2
BioArchLinux/r-bsda/PKGBUILD
View file

@ -10,7 +10,7 @@ pkgrel=2
pkgdesc="Basic Statistics and Data Analysis"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-e1071
)

2
BioArchLinux/r-canvasxpress.data/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Datasets for the 'canvasXpress' Package"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-canvasxpress/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Visualization Package for CanvasXpress in R"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-htmltools
r-htmlwidgets

2
BioArchLinux/r-cardelino/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Clone Identification from Single Cell Data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-combinat
r-genomeinfodb

2
BioArchLinux/r-catools/PKGBUILD
View file

@ -12,7 +12,7 @@ pkgrel=10
pkgdesc="Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-bitops
)

2
BioArchLinux/r-ccimpute/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-matrixstats

2
BioArchLinux/r-cfdnakit/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA)"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biobase
r-dplyr

2
BioArchLinux/r-chihaya/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Save Delayed Operations to a HDF5 File"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-delayedarray
r-hdf5array

2
BioArchLinux/r-chromstardata/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="ChIP-seq data for Demonstration Purposes"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-clubsandwich/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-sandwich
)

2
BioArchLinux/r-cohcap/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
perl
r-bh

2
BioArchLinux/r-cohcapanno/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Annotations for City of Hope CpG Island Analysis Pipeline"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-colourvalues/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="Assigns Colours to Values"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-rcpp
)

2
BioArchLinux/r-comethdmr/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-annotationhub
r-biocparallel

2
BioArchLinux/r-consrank/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-gtools
r-proxy

2
BioArchLinux/r-cotan/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="COexpression Tables ANalysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-assertthat
r-biocsingular

2
BioArchLinux/r-ctsv/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Identification of cell-type-specific spatially variable genes accounting for excess zeros"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-knitr

2
BioArchLinux/r-cubature/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Adaptive Multivariate Integration over Hypercubes"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-rcpp
)

2
BioArchLinux/r-cytomem/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Marker Enrichment Modeling (MEM)"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-flowcore
r-gplots

2
BioArchLinux/r-cytopipeline/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Automation and visualization of flow cytometry data analysis pipelines"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocfilecache
r-biocparallel

2
BioArchLinux/r-cytoviewer/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="An interactive multi-channel image viewer for R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-archive
r-colourpicker

2
BioArchLinux/r-delayedrandomarray/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Delayed Arrays of Random Values"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-delayedarray
r-dqrng

2
BioArchLinux/r-demuxsnp/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="scRNAseq demultiplexing using cell hashing and SNPs"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocgenerics
r-combinat

2
BioArchLinux/r-depinfer/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Inferring tumor-specific cancer dependencies through integrating ex-vivo drug response assays and drug-protein profiling"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-glmnet

2
BioArchLinux/r-despace/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="a framework to discover spatially variable genes"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-assertthat
r-biocgenerics

2
BioArchLinux/r-dgeobj.utils/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Differential Gene Expression (DGE) Analysis Utility Toolkit"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-assertthat
r-dgeobj

2
BioArchLinux/r-dgeobj/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Differential Gene Expression (DGE) Analysis Results Data Object"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-assertthat
r-magrittr

2
BioArchLinux/r-dicedesign/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Designs of Computer Experiments"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-differentialregulation/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Differentially regulated genes from scRNA-seq data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
blas
lapack

2
BioArchLinux/r-diffusionmap/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Diffusion Map"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-igraph
r-scatterplot3d

2
BioArchLinux/r-diffustats/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=2
pkgdesc="Diffusion scores on biological networks"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-checkmate
r-expm

2
BioArchLinux/r-directpa/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Direction Analysis for Pathways and Kinases"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-calibrate
r-plotly

2
BioArchLinux/r-dixontest/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="Dixon's Ratio Test for Outlier Detection"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-dnafusion/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Identification of gene fusions using paired-end sequencing"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-bamsignals
r-biocbaseutils

2
BioArchLinux/r-doubletrouble/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Identification and classification of duplicated genes"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-annotationdbi
r-biostrings

2
BioArchLinux/r-dreamerr/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Error Handling Made Easy"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-formula
r-stringmagic

2
BioArchLinux/r-edirquery/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Query the EDIR Database For Specific Gene"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-genomicranges
r-interactionset

2
BioArchLinux/r-epimix.data/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Data for the EpiMix package"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-experimenthub
)

2
BioArchLinux/r-epimix/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="an integrative tool for the population-level analysis of DNA methylation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-annotationdbi
r-annotationhub

2
BioArchLinux/r-epistasisga/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="An R package to identify multi-snp effects in nuclear family studies using the GADGETS method"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
blas
lapack

2
BioArchLinux/r-exact2x2/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=4
pkgdesc="Exact Tests and Confidence Intervals for 2x2 Tables"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-exactci
r-ssanv

2
BioArchLinux/r-exactci/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=4
pkgdesc="Exact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-ssanv
r-testthat

2
BioArchLinux/r-extrachips/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Additional functions for working with ChIP-Seq data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocio
r-biocparallel

2
BioArchLinux/r-eztune/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="Tunes AdaBoost, Elastic Net, Support Vector Machines, and Gradient Boosting Machines"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-ada
r-biocstyle

2
BioArchLinux/r-fcps/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Fundamental Clustering Problems Suite"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
pandoc
r-datavisualizations

2
BioArchLinux/r-featseekr/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="an R package for unsupervised feature selection"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-pheatmap
r-pracma

2
BioArchLinux/r-fixest/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Fast Fixed-Effects Estimations"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-dreamerr
r-numderiv

2
BioArchLinux/r-flatxml/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Tools for Working with XML Files as R Dataframes"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-crayon
r-httr

2
BioArchLinux/r-geoexplorer/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=2
pkgdesc="a webserver for gene expression analysis and visualisation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biobase
r-car

2
BioArchLinux/r-ggvenndiagram/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="A 'ggplot2' Implement of Venn Diagram"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-aplot
r-dplyr

2
BioArchLinux/r-ggwordcloud/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="A Word Cloud Geom for 'ggplot2'"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-colorspace
r-ggplot2

2
BioArchLinux/r-gopro/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Find the most characteristic gene ontology terms for groups of human genes"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-annotationdbi
r-dendextend

2
BioArchLinux/r-gosorensen/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-clusterprofiler
r-go.db

2
BioArchLinux/r-gower/PKGBUILD
View file

@ -11,7 +11,7 @@ pkgrel=3
pkgdesc="Gower's Distance"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-gsl/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=4
pkgdesc="Wrapper for the Gnu Scientific Library"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
gsl
r

2
BioArchLinux/r-gunifrac/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-ape
r-dirmult

2
BioArchLinux/r-harmonizr/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Handles missing values and makes more data available"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-doparallel
r-foreach

2
BioArchLinux/r-harmony/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Fast, Sensitive, and Accurate Integration of Single Cell Data"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
blas
lapack

2
BioArchLinux/r-herper/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="The Herper package is a simple toolset to install and manage conda packages and environments from R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-reticulate
r-rjson

2
BioArchLinux/r-hibag/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="HLA Genotype Imputation with Attribute Bagging"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-rcppparallel
)

2
BioArchLinux/r-hicvenndiagram/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Venn Diagram for genomic interaction data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-complexupset
r-eulerr

2
BioArchLinux/r-ibreakdown/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Model Agnostic Instance Level Variable Attributions"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-ggplot2
)

2
BioArchLinux/r-illumina450probevariants.db/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-inetgrate/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Integrates DNA methylation data with gene expression in a single gene network"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocstyle
r-caret

2
BioArchLinux/r-ingredients/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Effects and Importances of Model Ingredients"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-ggplot2
r-gridextra

2
BioArchLinux/r-ini/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=12
pkgdesc="Read and Write '.ini' Files"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-insight/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Easy Access to Model Information for Various Model Objects"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-intomics/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Integrative analysis of multi-omics data to infer regulatory networks"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-bestnormalize
r-bnlearn

2
BioArchLinux/r-irlba/PKGBUILD
View file

@ -11,7 +11,7 @@ pkgrel=5
pkgdesc="Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
blas
lapack

2
BioArchLinux/r-isobayes/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="Single Isoform protein inference Method via Bayesian Analyses"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-data.table
r-doparallel

2
BioArchLinux/r-kit/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Data Manipulation Functions Implemented in C"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-lazyeval/PKGBUILD
View file

@ -14,7 +14,7 @@ pkgrel=10
pkgdesc="Lazy (Non-Standard) Evaluation"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-logging/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=9
pkgdesc="R Logging Package"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r
)

2
BioArchLinux/r-magrene/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Motif Analysis In Gene Regulatory Networks"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocparallel
)

2
BioArchLinux/r-mariner/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Explore the Hi-Cs"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-abind
r-assertthat

2
BioArchLinux/r-marinerdata/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="ExperimentHub data for the mariner package"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-experimenthub
)

2
BioArchLinux/r-metabma/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=2
pkgdesc="Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-bridgesampling
r-coda

2
BioArchLinux/r-metavolcanor/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="Gene Expression Meta-analysis Visualization Tool"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-cowplot
r-data.table

2
BioArchLinux/r-microbiomestat/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Statistical Methods for Microbiome Compositional Data"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-foreach
r-ggplot2

2
BioArchLinux/r-microstasis/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Microbiota STability ASsessment via Iterative cluStering"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-ggplot2

2
BioArchLinux/r-micsqtl/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-dirmult

2
BioArchLinux/r-mockr/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=2
pkgdesc="Mocking in R"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-rlang
r-withr

2
BioArchLinux/r-modelr/PKGBUILD
View file

@ -11,7 +11,7 @@ pkgrel=4
pkgdesc="Modelling Functions that Work with the Pipe"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-broom
r-magrittr

2
BioArchLinux/r-moonlight2r/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Identify oncogenes and tumor suppressor genes from omics data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-annotationhub
r-biobase

2
BioArchLinux/r-mslp/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Predict synthetic lethal partners of tumour mutations"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-data.table
r-dorng

2
BioArchLinux/r-msquality/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="Quality metric calculation from Spectra and MsExperiment objects"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(GPL3)
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-ggplot2

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