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freebayes: update dependencies

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tabixpp: add libtabixpp.so
vcflib: build shared library
This commit is contained in:
sukanka 2022-07-11 10:13:49 +08:00
parent 2826c718f5
commit 9e2fce77f5
3 changed files with 6 additions and 3 deletions
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1
BioArchLinux/tabixpp/PKGBUILD
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@ -29,4 +29,5 @@ package() {
install -Dm 755 libtabix.a $pkgdir/usr/lib/libtabix.a install -Dm 755 libtabix.a $pkgdir/usr/lib/libtabix.a
ln -s /usr/lib/libtabix.so.1 ${pkgdir}/usr/lib/libtabix.so ln -s /usr/lib/libtabix.so.1 ${pkgdir}/usr/lib/libtabix.so
ln -s /usr/lib/libtabix.so ${pkgdir}/usr/lib/libtabixpp.so
} }

1
BioArchLinux/vcflib/PKGBUILD
View file

@ -46,6 +46,7 @@ prepare(){
done done
cd ${pkgname} cd ${pkgname}
sed -i 's| contrib/tabixpp/tabix.cpp|/usr/include/tabix/tabix.cpp|g' CMakeLists.txt sed -i 's| contrib/tabixpp/tabix.cpp|/usr/include/tabix/tabix.cpp|g' CMakeLists.txt
sed -i 's|vcflib STATIC|vcflib SHARED|g' CMakeLists.txt
sed -i 's|<tabix.hpp>|<tabix/tabix.hpp>|g' src/Variant.h sed -i 's|<tabix.hpp>|<tabix/tabix.hpp>|g' src/Variant.h
} }
build() { build() {

7
prepare/freebayes/PKGBUILD
View file

@ -17,12 +17,13 @@ sha256sums=('SKIP')
prepare() { prepare() {
cd "$pkgname" cd "$pkgname"
git submodule update --init --recursive git submodule update --init --recursive
# find vcflib
sed -i "s|dependency('libvcflib'|cc.find_library('libvcflib'" CMakeLists.txt
} }
build() { build() {
cd "$pkgname" cd "$pkgname"
rm -rf build test -d build || mkdir build
mkdir build meson --prefix=/usr --buildtype=release build -Dprefer_system_deps=true
meson --prefix=/usr --buildtype=debug build
cd build cd build
ninja -v ninja -v
} }