r-biocsingular: fix makedepends

This commit is contained in:
Pekka Ristola 2024-12-19 20:59:47 +02:00
parent 58ed8781a6
commit b4c8966172
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GPG key ID: 2C20BE716E05213E
2 changed files with 8 additions and 10 deletions

View file

@ -2,10 +2,10 @@
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=BiocSingular
_pkgver=1.20.0
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgrel=0
pkgdesc="Singular Value Decomposition for Bioconductor Packages"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
@ -21,6 +21,9 @@ depends=(
r-s4vectors
r-scaledmatrix
)
makedepends=(
r-assorthead
)
checkdepends=(
r-testthat
)
@ -32,14 +35,8 @@ optdepends=(
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d5a29e6d4dad421ec381313627270a0e')
b2sums=('53c788e4003bbb2fdf9880d430033f1bfe5dafe0e117e0e48e6ad5443c4fcd62716330b79563f3318c9ca39b10a62e7394f46cf597225d38c4b23a5e3399194a')
prepare() {
# skip test that makes a coredump
sed -i '/"scale calculations work correctly"/a\ \ \ \ skip("dumps core")' \
"$_pkgname/tests/testthat/test-utils.R"
}
md5sums=('bb704ac1d36b56a1b8ea141ffad65ab6')
b2sums=('a30a62e3e89de60baceafeb6f2dae274951d5d0ba6ca9d1db10f9b8538ae39108535b768f89ea5758a7c1fc495326a5ff81f5eedfd81a6a4fd54cb42e97987f1')
build() {
mkdir build

View file

@ -13,6 +13,7 @@ repo_depends:
- r-s4vectors
- r-scaledmatrix
repo_makedepends:
- r-assorthead
- r-testthat
update_on:
- source: rpkgs